NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6483.1 Public Homo sapiens 9 SH3GL2 24 110 108 CCDS HistoryNCBI Gene:6456Re-query CCDS DB by CCDS ID:6483.1Re-query CCDS DB by GeneID:6456See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380607.5 ENSP00000369981.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380607.5Link to Ensembl Protein Viewer:ENSP00000369981.4Re-query CCDS DB by Nucleotide ID:ENST00000380607Re-query CCDS DB by Protein ID:ENSP00000369981
Original member Current member NCBI NM_003026.5 NP_003017.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003026.5Link to Protein Sequence:NP_003017.1Re-query CCDS DB by Nucleotide ID:NM_003026Re-query CCDS DB by Protein ID:NP_003017Link to BLAST:NP_003017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003017.1 352 Q99962 352 100% 0 0

Chromosomal Locations for CCDS 6483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 17579243 17579287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17747066 17747134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17761437 17761509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17786381 17786524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17787380 17787513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17789392 17789550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17791231 17791334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17793367 17793497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17795544 17795743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTCGGTGGCCGGCCTCAAGAAGCAGTTCCATAAAGCCACTCAGAAAGTGAGTGAGAAGGTTGGAGGAG
CTGAAGGAACCAAGCTAGATGATGACTTCAAAGAGATGGAAAGGAAAGTGGATGTCACCAGCAGGGCTGT
GATGGAAATAATGACTAAAACAATTGAATACCTTCAACCCAATCCAGCTTCCAGAGCTAAGCTCAGCATG
ATCAACACCATGTCAAAAATCCGTGGCCAGGAGAAGGGGCCAGGCTATCCTCAGGCAGAGGCGCTGCTGG
CAGAGGCCATGCTCAAATTTGGAAGAGAGCTTGGAGATGATTGCAACTTTGGCCCAGCACTTGGTGAGGT
CGGGGAGGCCATGCGGGAACTGTCGGAGGTCAAAGACTCTTTGGACATAGAAGTGAAGCAGAACTTCATT
GACCCTCTTCAGAATCTTCATGACAAAGATCTTAGGGAAATTCAACATCATCTAAAGAAGTTGGAGGGTC
GACGCCTGGATTTTGATTATAAGAAGAAACGACAAGGCAAGATTCCGGATGAAGAGCTTCGTCAAGCTCT
AGAGAAATTTGATGAGTCTAAGGAAATTGCTGAGTCAAGCATGTTCAATCTCTTGGAGATGGATATTGAA
CAAGTGAGCCAGCTCTCTGCACTTGTGCAAGCTCAGCTGGAGTACCACAAGCAGGCAGTCCAGATCCTGC
AGCAAGTCACGGTCAGACTGGAAGAAAGAATAAGACAGGCTTCATCTCAGCCTAGAAGGGAATATCAACC
TAAACCACGAATGAGCCTGGAGTTTCCAACTGGAGACAGTACTCAGCCCAATGGGGGTCTCTCCCACACA
GGCACTCCCAAACCTTCAGGTGTCCAAATGGATCAGCCCTGCTGCCGAGCTCTGTACGACTTTGAACCTG
AAAATGAAGGGGAGTTGGGATTTAAAGAGGGCGATATCATCACACTCACTAACCAAATTGATGAGAACTG
GTATGAGGGGATGCTGCATGGCCATTCAGGCTTCTTCCCCATCAATTATGTGGAAATTCTGGTTGCCCTG
CCCCATTAG

Translation (352 aa):
MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSM
INTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFI
DPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIE
QVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHT
GTPKPSGVQMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVAL
PH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH