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Report for CCDS79565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79565.1 Public Mus musculus 17 Plin4 23 108 98 CCDS HistoryNCBI Gene:57435Re-query CCDS DB by CCDS ID:79565.1Re-query CCDS DB by GeneID:57435See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190703.6 ENSMUSP00000139859.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190703.6Link to Ensembl Protein Viewer:ENSMUSP00000139859.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190703Re-query CCDS DB by Protein ID:ENSMUSP00000139859
Original member NCBI NM_020568.3 NP_065593.2 Updated not alive Link to Nucleotide Sequence:NM_020568.3Link to Protein Sequence:NP_065593.2Re-query CCDS DB by Nucleotide ID:NM_020568Re-query CCDS DB by Protein ID:NP_065593
Current member NCBI NM_020568.4 NP_065593.2 Accepted alive Link to Nucleotide Sequence:NM_020568.4Link to Protein Sequence:NP_065593.2Re-query CCDS DB by Nucleotide ID:NM_020568Re-query CCDS DB by Protein ID:NP_065593Link to BLAST:NP_065593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065593.2 1403 O88492-1 1403 100% 0 0

Chromosomal Locations for CCDS 79565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56102007 56102330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56102409 56102495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56103110 56103297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56103417 56105501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56106096 56107374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56108588 56108646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56109313 56109451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56109538 56109588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4212 nt):
ATGTCAGCTTCAGGAGATGGGACCAGGGTCCCCCCCAAATCCAAAGGCAAGACCTTGAGCAGTTTCTTTG
GGTCCCTGCCTGGCTTCAGCTCTGCCCGGAACCTGGTGTCCCACACTCACAGCTCCACCTCCACAAAGGA
CTTACAAACAGCAACAGACCCCTCGGGGACTCCTGCCCCCTCATCTAAAGTGTCCACCAACTCACAGATG
GCAGGGGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGACAGCTGGAGACAAGGACATGGGAAGTTTCA
GTGTGACCAGCAGTGAAGATGCCTTCTCTGGGGTGTTTGGCATCATGGATGCTGCAAAAGGAATGGTCCA
GGGTGGACTGGGTGCTACCCAGTCGGCCCTTGTCGGAACTAAGGAGGCAGTATCTGGAGGTGTGATGGGA
GCAGTGGGCGTGGCCAAAGGTCTTGTCAAGGGAGGTCTTGACACTTCAAAGAATGTCCTCACCAATACGA
AGGACACAGTTACCACAGGAGTCATGGGAGCTGCAAACATGGCCAAAGGGACAGTACAGACAGGCCTGGA
CACCACCAAGTCTGTGGTCATGGGCACTAAGGACACAGTGGCCACAGGACTTGCAGGGGCTGTGAATGTG
GCTAAAGGCACCATCCAGGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGGCACTAAGGACACGGTGA
CCACAGGACTCACAGGGGCTGTGAACGTGGCTAAAGGTGTTGTCCAGGGTGGCCTGGACACTACCAAGTC
TGTGGTCATGGGCACCAAGGACACAGTAACCACAGGACTCACAGGGGCCATGAATGTGGCTAAAGGCACA
GCGCAGATGGGTATAGACACCAGCAAGACTGTGCTGACTGGCACAAAGGACACTGTATGTGCTGGGGCCA
CAGGAGCCATTAATGTAGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACCACCAAGTCTGTGCTCATAGG
CACCAAGGATACGGTGACCACAGGGCTCACAGGGGCTGTGAACGTGGCTAAAGGTGCTGTCCAGGGAGGC
CTGGACACTACCAAGTCTGTGGTCATGGGCACCAAGGACACGGTAACCACAGGACTCACTGGGGCCATGA
ATGTGGCTAAAGGCACAGCACAGATGGGTCTTGGCACCAGCAAGACTGTGCTGACTGGCACAAAGGACAC
TGTATGTGCTGGGCTCACAGGAGCCATTAATGTGGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACCACC
AAGTCTGTGCTCATGGGTACAAAGGACACAGTGACCACAGGGCTCACAGGGGCTGTGAACGTGGCTAAAG
GTACCATCCAGGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGGCACTAAGGACACGGTGACCACAGG
GCTCACAGGGGCTGTGAACGTGGCTAAAGGTACCATCCAGGGTGGCCTGGACACCACCAAGTCTGTGGTC
ATGGGCACTAAGGACACGGTGACCACAGGACTCACAGGGGCTGTGAACGTGGCTAAAGGTGCTGCCCAGG
GAGGCCTGGACACTACCAAGTCTGTGGTCATGGGCACCAAGGACACAGTAACCACAGGACTCACAGGGGC
CATGAATGTGGCTAAAGGCACAGCACAGATGGGTCTTGGCACCAGCAAGACTGTGCTGACTGGCACAAAG
GACACTGTATGTGCTGGGCTCACAGGAGCCATTAATGTGGCTAAAGGGGCTGCCCAAGGAGGCCTGGACA
CCACCAAGTCTGTGCTCATGGGTACAAAGGACACAGTGACCACAGGGCTCACAGGGGCTGTGAACGTGGC
TAAAGGTACCATCCAGGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGGCACTAAGGACACGGTGACC
ACAGGACTCACAGGGGCTGTGAACGTGGCTAAAGGTGCTGTCCAGGGTGGCCTGGACACTACCAAGTCTG
TGGTCATGGGCACCAAGGACACAGTAACCACAGGACTCACAGGGGCCTTGAATGTGGCTAAAGGCACAGC
ACAGATGGGTATAGACACCAGCAAGACTGTGCTGATTGGCACAAAGGACACTGTATGTGCTGGGGCCACA
GGAGCCATTAACATGGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACTACCAAGTCCGTGCTCATGGGTA
CAAAGGACACGGTGACCACAGGACTCACAGGGGCCATTAACGTGGCTAAAGGGTCTGCCCAAGGAGGCCT
GGACACCACCAAGTCTGTGCTCATTGGTACGAAGGACACGGTGACCACAGGGCTCACAGGAGCCTTGAAT
GTGGCCAAAGGAACAGTACAGACAGGTCTGGATACTAGCCAGAGAGTGCTGACAGGCACAAAGGACAATG
TATATGCTGGGGTCACTGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGGGCGGCTTGGACACCACCAA
GTCTGTGGTCATGGGCACTAAGGACACGGTGACCACAGGACTCACAGGGGCTGTGAACGTGGCTAAAGGT
GCTGTCCAGGGTGGCCTGGACACTACCAAATCTGTGGTCATGGGCACCAAGGACACAGTAACCACAGGAC
TCACAGGGGCCATGAATGTGGCTAAAGGCACAGCACAGATGGGTATAGACACCAGCAAGACTGTGCTGAC
TGGCACAAAGGACACTGTATGTGCTGGGCTCACAGGAGCCATTAATGTAGCTAAAGGGGCTACCCAAGGA
GGCCTGGACACCACCAAGTCTGTGCTCATGGGTACAAAGGACACGGTGACCACAGGACTCACAGGTGCCA
TTAATGTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATACCACCAAGTCTGTGCTCTTAGGTACCAAGGA
CACCGTGACCACGGGGCTCACAGGGGCAGCAAATGTGGCCAAAGAAACAGTGCAAATGGGTCTGGATACC
AGCAAGAACATCCTGATGGACACAAAGGACTCTATATGTGCTGGGGCCACAGGAGCCATTACTGTGGTCA
AAGGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGG
AACAGTGCAAACAAGCCTGGACACCAGCAAGCATATGCTTATAGGCATGAAGGACACTGTCTGTGCTGGG
GTTACCAGTGCCATGAACATGGCTAAAGGTATTCATAAGAACACAGACACCACCAGAGACACCCAGTCTT
CTGTGCTGGCTCATTCAGGTAATGTAGCCACCAATGCCATCCACACAGGTGTTCACACAGTTCCGAGTTC
ACTCTCTGGCTCTCATTCCATCATCTGTCATGAGCCTAGCATTTACAGAGCCACTAACCATGGGGTAGGA
CAAGCCATCCTGACTTCTACAGAGTCCCTGTGCTGTGAGACAAGCAGCTTCTCAGACAAATATGGCTTGG
GGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTGGTATGGCTTCATCTGCCTGCGCAGC
TACCAGGTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTGAAA
GGGCTGGGTGATATCTTTCAGCCCATGACAACTGAGGAACAAGCTCAGCTGGCAGTCTCAGAGTCAGGGC
CCCGAGTACTCTCTGCTGACCGGGGAAGCTACTACATCCGTCTGGGTGACCTGGCCCCTAGCTTCCGCCA
GCGGGCCTTCGAACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACTAGCCCAG
CTCCAGGAGGCCTTCCAGATGACAGACATGACCATGGAGGCTGCATGTGGGAAGCTGTGCAGTGACCAGA
GCTTGAACACCATGGTGGAGGCTGTTGGTAGCCATGAGATGCGGGCTTCCGTGGCTCAGGACAGGCTGTG
CACCCTCGCCCATCAGCTCCATGCAGCTTACAGCAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGTG
CAGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTGTGTCTTCGGAGGCAGGTA
GTGAGCTGCAGACAGAGCAGCTGGCCCAGAGCAGTGCTGGTGTTGTTGAGGCCTGGCAGGGCCTGGAGGT
GCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGACCCTTCACCTCGATGCCTTGT
GGCCAGCTGTAG

Translation (1403 aa):
MSASGDGTRVPPKSKGKTLSSFFGSLPGFSSARNLVSHTHSSTSTKDLQTATDPSGTPAPSSKVSTNSQM
AGDAAGLLQPSEQTAGDKDMGSFSVTSSEDAFSGVFGIMDAAKGMVQGGLGATQSALVGTKEAVSGGVMG
AVGVAKGLVKGGLDTSKNVLTNTKDTVTTGVMGAANMAKGTVQTGLDTTKSVVMGTKDTVATGLAGAVNV
AKGTIQGGLDTTKSVVMGTKDTVTTGLTGAVNVAKGVVQGGLDTTKSVVMGTKDTVTTGLTGAMNVAKGT
AQMGIDTSKTVLTGTKDTVCAGATGAINVAKGAAQGGLDTTKSVLIGTKDTVTTGLTGAVNVAKGAVQGG
LDTTKSVVMGTKDTVTTGLTGAMNVAKGTAQMGLGTSKTVLTGTKDTVCAGLTGAINVAKGAAQGGLDTT
KSVLMGTKDTVTTGLTGAVNVAKGTIQGGLDTTKSVVMGTKDTVTTGLTGAVNVAKGTIQGGLDTTKSVV
MGTKDTVTTGLTGAVNVAKGAAQGGLDTTKSVVMGTKDTVTTGLTGAMNVAKGTAQMGLGTSKTVLTGTK
DTVCAGLTGAINVAKGAAQGGLDTTKSVLMGTKDTVTTGLTGAVNVAKGTIQGGLDTTKSVVMGTKDTVT
TGLTGAVNVAKGAVQGGLDTTKSVVMGTKDTVTTGLTGALNVAKGTAQMGIDTSKTVLIGTKDTVCAGAT
GAINMAKGAAQGGLDTTKSVLMGTKDTVTTGLTGAINVAKGSAQGGLDTTKSVLIGTKDTVTTGLTGALN
VAKGTVQTGLDTSQRVLTGTKDNVYAGVTGAVNVAKGTIQGGLDTTKSVVMGTKDTVTTGLTGAVNVAKG
AVQGGLDTTKSVVMGTKDTVTTGLTGAMNVAKGTAQMGIDTSKTVLTGTKDTVCAGLTGAINVAKGATQG
GLDTTKSVLMGTKDTVTTGLTGAINVAKGAAQGGLDTTKSVLLGTKDTVTTGLTGAANVAKETVQMGLDT
SKNILMDTKDSICAGATGAITVVKGAAQGGLDTSNAALTGTMDTAKGTVQTSLDTSKHMLIGMKDTVCAG
VTSAMNMAKGIHKNTDTTRDTQSSVLAHSGNVATNAIHTGVHTVPSSLSGSHSIICHEPSIYRATNHGVG
QAILTSTESLCCETSSFSDKYGLGHVTEPRADTKTLVSGMASSACAATRSVEECGQLAATGFAALPDELK
GLGDIFQPMTTEEQAQLAVSESGPRVLSADRGSYYIRLGDLAPSFRQRAFEHALSHIQHNQFQARAALAQ
LQEAFQMTDMTMEAACGKLCSDQSLNTMVEAVGSHEMRASVAQDRLCTLAHQLHAAYSSLVTSLQGLPEV
QQQAGQARHSLCKLYGLVSSEAGSELQTEQLAQSSAGVVEAWQGLEVLLEKLQQNPPLSWLVGPFTSMPC
GQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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