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Report for CCDS40298.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40298.2 Public Mus musculus 8 Ido2 23 108 98 CCDS HistoryNCBI Gene:209176Re-query CCDS DB by CCDS ID:40298.2Re-query CCDS DB by GeneID:209176See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 40298.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40298.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121992.1 ENSMUSP00000113979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121992.1Link to Ensembl Protein Viewer:ENSMUSP00000113979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121992Re-query CCDS DB by Protein ID:ENSMUSP00000113979
Original member Current member NCBI NM_145949.2 NP_666061.3 Accepted alive Link to Nucleotide Sequence:NM_145949.2Link to Protein Sequence:NP_666061.3Re-query CCDS DB by Nucleotide ID:NM_145949Re-query CCDS DB by Protein ID:NP_666061Link to BLAST:NP_666061.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666061.3 405 Q8R0V5 405 100% 0 0

Chromosomal Locations for CCDS 40298.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 24533603 24533952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24535142 24535290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24540594 24540645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24546507 24546624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24547140 24547239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24548820 24548834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24550769 24550887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24553721 24553840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24558148 24558243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24576150 24576248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGAGCCTCAAAGTCAGAGCATGACGCTGGAGGTGCCGTTGTCCTTGGGGAGATACCACATTTCTGAGG
AATATGGCTTTCTCCTTCCAAATCCTCTGGAAGCACTTCCAGATCATTACAAGCCTTGGATGGAAATTGC
CCTCAGACTTCCTCACTTAATCGAGAACCGCCAGCTCCGAGCTCACGTGTACAGGATGCCTCTCCTGGAC
TGCAGATTCCTAAAGAGTTACCGTGAGCAGCGCCTGGCACACATGGCGCTGGCCGCTATCACCATGGGAT
TCGTCTGGCAGGAGGGGGAAGGCCAACCCCAAAAGGTGCTGCCAAGATCTCTTGCCATTCCTTTTGTTGA
GGTATCCAGGAACTTGGGACTCCCGCCTATCCTGGTCCACTCTGACCTGGTGCTGACAAACTGGACCAAA
AGGAACCCAGAAGGACCGTTGGAAATCAGTAACCTGGAAACCATCATCTCATTTCCGGGGGGAGAGAGCC
TGCGGGGCTTCATCCTAGTGACAGTCTTGGTGGAGAAGGCAGCAGTGCCCGGCCTTAAGGCCCTGGTTCA
GGGAATGGAGGCCATTCGGCAACACAGTCAGGACACCCTGCTAGAAGCCCTGCAGCAGCTGAGACTCTCC
ATCCAGGATATCACCAGAGCCTTGGCCCAAATGCATGATTATGTGGACCCAGACATATTTTACTCGGTCA
TCCGGATCTTCCTCTCTGGGTGGAAGGACAATCCAGCCATGCCTGTGGGGCTGGTCTATGAAGGTGTTGC
CACAGAGCCTCTGAAGTACTCTGGAGGAAGTGCAGCCCAGAGCTCCGTGCTTCATGCCTTCGATGAGTTC
CTGGGCATTGAGCATTGCAAGGAAAGTGTTGGCTTTCTACACAGAATGAGGGACTACATGCCGCCTTCCC
ATAAGGCTTTCCTGGAAGATCTCCACGTAGCTCCTTCTCTGAGAGACTACATACTGGCCTCTGGTCCTGG
GGACTGCCTGATGGCCTATAACCAGTGTGTGGAGGCCCTGGGAGAGCTGCGCAGTTACCACATCAATGTC
GTGGCCAGATACATTATCTCCGCTGCCACCAGGGCCAGGAGCAGGGGGCTAACTAATCCCTCACCCCATG
CCTTGGAAGACAGGGGCACTGGGGGTACTGCCATGCTGAGCTTCTTGAAGAGTGTCAGGGAGAAGACCAT
GGAGGCCCTCCTGTGTCCTGGTGCTTAG

Translation (405 aa):
MEPQSQSMTLEVPLSLGRYHISEEYGFLLPNPLEALPDHYKPWMEIALRLPHLIENRQLRAHVYRMPLLD
CRFLKSYREQRLAHMALAAITMGFVWQEGEGQPQKVLPRSLAIPFVEVSRNLGLPPILVHSDLVLTNWTK
RNPEGPLEISNLETIISFPGGESLRGFILVTVLVEKAAVPGLKALVQGMEAIRQHSQDTLLEALQQLRLS
IQDITRALAQMHDYVDPDIFYSVIRIFLSGWKDNPAMPVGLVYEGVATEPLKYSGGSAAQSSVLHAFDEF
LGIEHCKESVGFLHRMRDYMPPSHKAFLEDLHVAPSLRDYILASGPGDCLMAYNQCVEALGELRSYHINV
VARYIISAATRARSRGLTNPSPHALEDRGTGGTAMLSFLKSVREKTMEALLCPGA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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