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Report for CCDS17910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17910.1 Public Mus musculus 3 Adgrl4 23 108 98 CCDS HistoryNCBI Gene:170757Re-query CCDS DB by CCDS ID:17910.1Re-query CCDS DB by GeneID:170757See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046977.11 ENSMUSP00000041939.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046977.11Link to Ensembl Protein Viewer:ENSMUSP00000041939.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046977Re-query CCDS DB by Protein ID:ENSMUSP00000041939
Original member Current member NCBI NM_133222.3 NP_573485.2 Accepted alive Link to Nucleotide Sequence:NM_133222.3Link to Protein Sequence:NP_573485.2Re-query CCDS DB by Nucleotide ID:NM_133222Re-query CCDS DB by Protein ID:NP_573485Link to BLAST:NP_573485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573485.2 739 Q923X1 739 100% 0 0

Chromosomal Locations for CCDS 17910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 151437983 151438004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151439238 151439387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151492277 151492426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151497827 151497976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151498350 151498420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151500046 151500225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151500329 151500512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151501725 151501841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151507349 151507551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151509203 151509379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151510586 151510789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151517397 151517617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151517741 151517807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151540961 151541052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151542681 151542849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151543234 151543296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGAGACTCCTCCCGCTTCTAGTGGGTTTCTCCACTTTGCTGAATTGTTCCTACACACAAAACTGCAGCA
AGACAACGTGTCTCCCCAATGCCAAGTGCGAAGTGCACAATGGTGTGGAAGCCTGCTTCTGCAGCCAGGG
GTACTCTGGGAATGGCGTCACGATTTGTGAAGATATAGATGAGTGCAGCGAGTCTTCTGTCTGCGGTGAT
CATGCTGTGTGTGAAAACGTGAACGGGGGCTTCAGCTGCTTCTGCAGGGAAGGTTATCAGACCGCTACGG
GGAAGTCACAGTTCACACCTAATGATGGCTCTTACTGCCAAGATATAGATGAGTGCAGCGAGTCTTCTGT
CTGCGGTGATCATGCTGTGTGTGAAAACGTGAACGGGGGCTTCAGCTGCTTCTGCAGGGAAGGTTATCAG
ACCGCCACGGGGAAGTCACAGTTCACACCTAATGATGGCTCTTACTGCCAAGAAAGCATGAATTCAAATT
GCCACTTAGAGCATGCCTGCATCGCTGCAAACATTAATAAAACTTTAAAAAGAATTGGACCCATAACAGA
ACAGACAACTTTACTCCAAGAAATCTACAGAAATTCTGAGGCTGAGCTCTCTCTGATGGATATAGTCACA
TACATAGAGATCCTAACTGAATCATCCTCACTACTAGGCCACCCGAACAGCACCACTTCATACAAGGATG
CCCACTTCAACTCAACTCTTACTGAATTTGGGGAAACCATCAATAATTTTGTTGAAAGGAGTACACATAA
AATGTGGGACCAGTTACCGACAAATCACAGAAGACTTCATCTCACAAAACTGATGCACACTGCTGAGCTA
GTCACCTTACAGATCGCTCAGAACACCCAGAAGAATTCTCAGTTTGATATGAATTCTACTGACTTGGCTC
TCAAGGTTTTTGCTTTTGATTCAACTCACATGAAGCATGCTCACCCCCACATGAATGTGGATGGAGGCTA
TGTGAAAATATCCCCAAGGAGAAAGGCTGCACATGGCACAACTGGCAATGTAGTAGTTGCATTCCTCTGC
TATAAGAGCATTGGTCCCTTGCTATCCTCATCTGACAACTTCTTACTGGACACTCAAAATGATAATTCTG
AAGGAAAGGAAAAAGTCATTTCTTCAGTGATTTCTGCCTCAATTAGCTCAAATCCACCCACATTATATGA
ACTTGAAAAAATTACATTTACACTAAGTCATGTAAAGCTCTCAGATAAGCACCGGACCCAGTGTGCCTTT
TGGAACTACTCAGTTGATGCCATGAACAATGGCAGCTGGTCAACGGAGGGCTGTGAGCTGACACACTCAA
ACGACACCCACACCTCCTGCCGCTGTAGTCACCTGACACACTTTGCGATTTTGATGTCCTCTACTTCTTC
CATTGGGATTAAGGATTATAATATCCTGACGAGGATCACTCAACTCGGGATAATCATCTCCCTGATCTGC
CTCGCCATCTGCATCTTCACCTTCTGGTTCTTCAGTGAAATCCAAAGCACCAGGACCACGATTCACAAGA
ACCTGTGCTGCAGCCTCTTTCTTGCAGAACTTGTTTTTCTTATTGGGATCAACATAAATACGAATAAGTT
GGTCTGCTCTATCATTGCTGGCCTGCTCCATTACTTCTTCTTAGCTGCCTTTGCCTGGATGTGCATCGAA
GGCATTCACCTATACCTCATCGTTGTCGGCGTCATCTACAACAAGGGGTTTTTACACAAGAACTTTTATA
TCTTTGGCTATCTCAGCCCAGCTGTAGTTGTTGGATTCTCAGCATCTTTAGGATACAGATATTATGGAAC
CACGAAAGTATGTTGGCTGAGCACTGAAAACAACTTCATTTGGAGCTTTATAGGACCAGCGTGTCTAATC
ATTCTTGTGAATCTCTTGGCTTTTGGAGTTATCATATACAAAGTTTTCCGCCACACTGCTGGACTGAAAC
CAGAAGTTAGTTGCTATGAGAACATAAGGTCTTGTGCCAGAGGTGCCCTAGCCCTCCTCTTCCTTCTGGG
TACCACCTGGATCTTTGGGGTTCTCCATGTAGTGCATGCATCTGTTGTGACAGCCTACCTCTTCACAGTC
AGCAATGCTTTCCAAGGGATGTTCATTTTCTTATTCCTATGCGTTTTGTCTAGAAAGATTCAAGAGGAAT
ATTATAGATTGTTCAAAAATGTCCCCTGCTGCTTTGGATGTTTAAGATAA

Translation (739 aa):
MRLLPLLVGFSTLLNCSYTQNCSKTTCLPNAKCEVHNGVEACFCSQGYSGNGVTICEDIDECSESSVCGD
HAVCENVNGGFSCFCREGYQTATGKSQFTPNDGSYCQDIDECSESSVCGDHAVCENVNGGFSCFCREGYQ
TATGKSQFTPNDGSYCQESMNSNCHLEHACIAANINKTLKRIGPITEQTTLLQEIYRNSEAELSLMDIVT
YIEILTESSSLLGHPNSTTSYKDAHFNSTLTEFGETINNFVERSTHKMWDQLPTNHRRLHLTKLMHTAEL
VTLQIAQNTQKNSQFDMNSTDLALKVFAFDSTHMKHAHPHMNVDGGYVKISPRRKAAHGTTGNVVVAFLC
YKSIGPLLSSSDNFLLDTQNDNSEGKEKVISSVISASISSNPPTLYELEKITFTLSHVKLSDKHRTQCAF
WNYSVDAMNNGSWSTEGCELTHSNDTHTSCRCSHLTHFAILMSSTSSIGIKDYNILTRITQLGIIISLIC
LAICIFTFWFFSEIQSTRTTIHKNLCCSLFLAELVFLIGININTNKLVCSIIAGLLHYFFLAAFAWMCIE
GIHLYLIVVGVIYNKGFLHKNFYIFGYLSPAVVVGFSASLGYRYYGTTKVCWLSTENNFIWSFIGPACLI
ILVNLLAFGVIIYKVFRHTAGLKPEVSCYENIRSCARGALALLFLLGTTWIFGVLHVVHASVVTAYLFTV
SNAFQGMFIFLFLCVLSRKIQEEYYRLFKNVPCCFGCLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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