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Report for CCDS47493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47493.1 Public Homo sapiens 6 PHACTR2 24 110 108 CCDS HistoryNCBI Gene:9749Re-query CCDS DB by CCDS ID:47493.1Re-query CCDS DB by GeneID:9749See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440869.7 ENSP00000417038.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000440869.7Link to Ensembl Protein Viewer:ENSP00000417038.2Re-query CCDS DB by Nucleotide ID:ENST00000440869Re-query CCDS DB by Protein ID:ENSP00000417038
Original member Current member NCBI NM_001100164.2 NP_001093634.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100164.2Link to Protein Sequence:NP_001093634.1Re-query CCDS DB by Nucleotide ID:NM_001100164Re-query CCDS DB by Protein ID:NP_001093634Link to BLAST:NP_001093634.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093634.1 645 O75167-4 645 100% 0 0

Chromosomal Locations for CCDS 47493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143678164 143678209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143712016 143712183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143748985 143749065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143753754 143753912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143760401 143760640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143765261 143765798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143772258 143772457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143774059 143774215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143777328 143777383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143783219 143783280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143788773 143788910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143807057 143807133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143823674 143823689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGGCCAGACCTCGGTGTCCACGCTGTCCCCGCAGCCCGGCAGCGTTGACGGACTGGACAAAGCTTCTA
TAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCAC
CATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCG
GCAGTATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGG
AATTGCCTGATCAAGATGGAGATGTAACAGTTAACTTTGAAAATTCAAACGGGCACATGATACCCATCGG
AGAGGAATCTACCCGAGAGGAAAATGTAGTAAAGTCTGAAGAAGGTAATGGCTCTGTATCTGAAAAAACA
CCACCTCTGGAGGAACAGGCAGAAGATAAGAAAGAGAACACTGAAAACCACTCTGAAACACCGGCAGCTC
CTGCTCTACCTCCTTCTGCTCCTCCTAAGCCTAGACCCAAACCTAAACCCAAAAAATCACCTGTGCCTCC
GAAAGGGGCCACTGCTGGGGCCAGCCACAAAGGTGATGAAGTGCCTCCCATTAAAAAAAATACCAAGGCT
CCTGGTAAGCAGGCCCCCGTCCCTCCACCCAAGCCAGCAAGCCGAAACACGACCCGAGAGGCTGCTGGCT
CCTCTCATTCAAAAAAAACAACTGGCTCTAAAGCATCAGCTTCGCCATCCACTTCATCCACCTCATCTCG
TCCCAAAGCTTCAAAGGAGACAGTTTCTAGCAAAGCAGGGACAGTGGGGACCACCAAGGGCAAGAGAAAA
ACTGACAAGCAGCCAATAACTTCTCACCTGTCCTCAGACACAACAACTTCTGGCACATCCGACCTGAAAG
GAGAGCCTGCAGAGACCAGAGTGGAGAGTTTCAAACTCGAACAGACTGTCCCTGGAGCTGAGGAGCAGAA
CACAGGCAAATTCAAGTCCATGGTCCCTCCACCCCCTGTGGCTCCAGCACCTTCTCCTCTGGCCCCCCCT
CTCCCTCTTGAGGATCAGTGCATTACTGCCTCAGACACTCCAGTTGTCCTCGTCAGCGTTGGAGCTGACC
TGCCCGTCTCTGCCTTAGACCCAAGTCAGCTTCTTTGGGCTGAAGAGCCGACGAACAGAACCACTCTCTA
CTCAGGCACTGGCTTAAGTGTTAACAGAGAAAATGCAAAATGTTTCACAACCAAAGAGGAGCTGGGGAAG
ACAGTGCCTCAGCTACTGACTCCTGGGCTGATGGGCGAATCTTCAGAATCCTTTAGTGCCTCAGAAGATG
AAGGCCACAGGGAATACCAAGCCAATGACTCTGACTCGGACGGGCCTATCTTGTACACCGATGATGAGGA
CGAAGACGAAGATGAGGATGGCAGTGGAGAAAGTGCTTTGGCAAGTAAAATACGCCGGAGGGATACTCTT
GCTATCAAACTTGGCAACAGACCATCTAAGAAAGAACTAGAGGACAAAAACATCTTGCAGCGTACATCTG
AAGAAGAGAGGCAGGAAATCCGACAACAAATTGGAACCAAGTTAGTCAGGAGGCTGAGCCAGAGGCCCAC
AACTGAAGAATTAGAGCAAAGAAACATCCTAAAACAAAAGAATGAAGAAGAGGAACAAGAAGCAAAAATG
GAACTTAAACGCAGACTCAGCAGAAAGCTCAGCCTGAGACCCACAGTGGCAGAGCTACAAGCTCGAAGGA
TCCTGCGATTTAACGAGTATGTAGAAGTCACGGATTCTCCTGACTATGACCGCCGAGCAGACAAGCCCTG
GGCCAGGTTAACACCTGCAGACAAGGCAGCAATAAGGAAAGAACTAAATGAATTTAAAAGCACAGAAATG
GAAGTTCATGAAGAGAGTCGACAGTTTACAAGGTTTCATCGTCCATAA

Translation (645 aa):
MGQTSVSTLSPQPGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETS
AVLERKISTRQSREELIRRGVLKELPDQDGDVTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKT
PPLEEQAEDKKENTENHSETPAAPALPPSAPPKPRPKPKPKKSPVPPKGATAGASHKGDEVPPIKKNTKA
PGKQAPVPPPKPASRNTTREAAGSSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRK
TDKQPITSHLSSDTTTSGTSDLKGEPAETRVESFKLEQTVPGAEEQNTGKFKSMVPPPPVAPAPSPLAPP
LPLEDQCITASDTPVVLVSVGADLPVSALDPSQLLWAEEPTNRTTLYSGTGLSVNRENAKCFTTKEELGK
TVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYTDDEDEDEDEDGSGESALASKIRRRDTL
AIKLGNRPSKKELEDKNILQRTSEEERQEIRQQIGTKLVRRLSQRPTTEELEQRNILKQKNEEEEQEAKM
ELKRRLSRKLSLRPTVAELQARRILRFNEYVEVTDSPDYDRRADKPWARLTPADKAAIRKELNEFKSTEM
EVHEESRQFTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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