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Report for CCDS28143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28143.1 Public Mus musculus 16 Parp14 23 108 98 CCDS HistoryNCBI Gene:547253Re-query CCDS DB by CCDS ID:28143.1Re-query CCDS DB by GeneID:547253See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042665.8 ENSMUSP00000037657.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042665.8Link to Ensembl Protein Viewer:ENSMUSP00000037657.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042665Re-query CCDS DB by Protein ID:ENSMUSP00000037657
Original member Current member NCBI NM_001039530.3 NP_001034619.2 Accepted alive Link to Nucleotide Sequence:NM_001039530.3Link to Protein Sequence:NP_001034619.2Re-query CCDS DB by Nucleotide ID:NM_001039530Re-query CCDS DB by Protein ID:NP_001034619Link to BLAST:NP_001034619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034619.2 1817 Q2EMV9-1 1817 100% 0 0

Chromosomal Locations for CCDS 28143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 35834646 35834935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35835991 35836165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35839262 35839395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35840722 35841321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35841409 35841630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35844244 35844411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35844728 35844790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35845270 35845419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35846010 35846085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35852732 35852953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35853519 35853758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35856483 35858764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35860430 35860666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35863360 35863593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35865119 35865152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35866149 35866288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 35871167 35871353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5454 nt):
ATGGCAGCGTCGGGTTCCTTCCCGCTGCTGGTCGAGGGCTCTTGGGGCCCCGACCCCCCAAAGAACTTGA
TCAACAAGTTGCAAGTGTACTTCCAGAGCCGGAAGAAATCCGGAGGAGGGGAGTGCGAGGTCGTCCCGGA
GCCGGGGAACCCAGCACGCTTCCGGGTGCTCTTCTCCCCGGAGGATGTTCGGCAGAACGTTCTGGAGAGA
GGGAATCATGAGTTAGTGTGGCAAGAAAAAGGAACATTCAAGTTGACTGTCCTGATGCCCACAGACCCTG
AGGAAGCCTCAGCCTCTAAGAAGTCAAGGAAGGAGTCTCCAGAAGAGGAGTCCAAGACAAAAGAAGATGC
TGTGAAACAAGGTGATTTGGATATAACACATTCTCCCAGCAGTGGATCAGAAAAGACAGAAGATGTCCCA
AAAGAATGTGAAAATATTTCCTCCATGGTGGCATTTGAAAACCTGCCTGAGAAAGTATCCGAGATGGTGC
TGACCATCCTGGTGGAGAATATAAGCGGCCTCCCCAGTGATGACTTTAAGGTGGAAGTGAACCGAGATTT
TGCTGTTGCCGTGGTTACCTTTCAGAAGCCTATAGATATCAAAAAATTTATTGTTGACTGTATCAGCCAC
CGCTCAAATCAACAACTCCAGCTTGCCCCGAGACTTCTGGAAACAACGAATGTAGTCAGGGTGGAAAACC
TGCCTCCTGGGGTGGACGAGTACCAGCTGCAACTCTTCTTCGAAAACCCTTTCAACGGGGGCGGAAGGGT
CGCCCGAGTTGAGTGTTTCCCAGAAGAGAGTTCGGCACTGGTTGAGTTTTGTGACAGCAAAGTGTTAGAC
ACCGTCATGGCCAAGACACACAGTTACAACAAGATGCCACTGTCTGTCTTCCCCTATTATCCCTCTCTGG
GCACAGCCTTGTATGGTGAGGAGAAGCCTCTGATAAAGCTTCCAGCATCTTTCCAGGAGTCTCTTGATCT
TCCTTTGTGGAAGTTCTTTCAGAAAAATAATCATCTGATTGAGGAGATAAATAATGAAATGAGGTGCTGT
CACTGTGAGCTGACTTGGTCTGAAATCAATGGTAAACTGACCATCAGACCCGCTGCCACCTTAGTCAATC
ATAGACTGAGCATTAAGACCTGGCAGAGAGACGCATCCGCAGTGCTCTCTGGCATCAAGTCTAAATATGG
AGTGGAGTTGTTTGAAGTGTGCTCGCCAGTATGGGACATCATAAAGCATGAGTTAGAGTCAGGAGATGAC
AGGGTTTTGGTTGAGTTTGAAAAGGAGAGTCTAAACATAGCAGGAAAATCAGAAGACGTCCAAGGCATGA
GCCAGAAAATCAGGGAATTAATAGAGAGCACCACTGAAAAGCTCAGAAGGGAAGAGCAGAGTCTGAAGGA
GAAAGTGGCCATTTCCCCGGGAAAGCATTATCTTTTGCACCACAGTGGCTTCCTGAAGGATCTAAGCAAG
GGGTTCCCAGAGATGGAGATCTCTTACGACGCCACGGCTCAGTTCCTGTACTTGAAGGGCTTCCGTGCAG
ATGTGTACAAAGTAAAGTGTGACATCCAAGAGAAGGTGTTCTCCATGGCTCAAAAGGATGTCCAGGTCTC
TTCTGAAGTCTTCGAATTTCTGCAGCAAGTAGACAGTCAGAGACTCTCTAAGTCTCTGTTTGAGGCACAG
AACATTCTCGCCATATATGAGCTGAAAGGTACAGCTCTTTTCTTAGTTGGAAGTTCTTTCAAAGATCTGG
CAGAAGCCGAGACAAAAATGCTCAGTGCTTTAAGTCATAAGCAGATTGAAGTTGAGGACAAGGAGGTTCT
GATAAGTAATGGGTGGAAGAAGAAAGTTCACCCTCTGCAAAAGAGACACAGCTCTTGTGCAACCATTATA
GTCCAGAATGAATTGACTTCAGAAACCCCGGCAAAGGTCATTGTTACAGGCTGTGTGAAAGAAGTGAATG
AAATCCATAGGCAACTTTTTGAGTATTTGGAAAACAACATGAAAGTTGAAAGAGCACTTAAAATCAAACC
ATCCTTGATTGTTGACTATTTAAGGACAGACAAGAGGCTATTGTCAAAGATAAAGAAGGCACATGTGTAT
GTGCATTTTAAGCCTAAAGACAATCCAAACAGCATTTTGCTAACTGGCTGCAAGAGCAAAGTTCTAGAGT
GCATGAATCTAGTCAAGGAAATCCAGGATTCAGTCTGTGTCCAAAGATTCCAGACTGACAAAGCTGGCGT
CAGGCACTTCTTCAAAGATAAAGAATCGTATTACAAAACGGAGATTGGTCGTCAGTTCGGATGCGTCATT
GAATTGGAGGAGGATAGAGAGGAGAAGGGTGAAGAGGAGGATGGTGAAGAGGAGGAGGGTGAAGAGGAGG
GAGAAAGCAGCATTAATGAGCAGAAGTGTCACCTACAGAGGGACATAGCCCCCGGAGTCAAACTGTTCGT
CCTCGAGGAAGACCTGAGTCGGTTTCCCGTCGATGTGGTAGTGAATGCAGCAAATGAGAACCTGAAGCAT
ATCAGCGGTCTCGCACAGGCTCTCTCAAAGGCCGCTGGCCCTGAACTCCAAACAGAATGTGACCAGATAG
TAAAAGAGGGCGGCGTGGTCCTACCCGGCAATGCTGTTATCTCAAAAGCAGGCAAGCTCCCTTGTCACCA
CGTCATCCATGCGGTAGGGCCTCGATGGAAGGGAGATAAAGTCCTGGAGTGTGTGAGCCTGCTAAAGAAA
GTGGTTAGACAAAGCCTCAGTTTAGCTGAGGAGCACAGGTGCCGCTCCATAGCCATGCCAGCGGTCAGCG
CTGGGATCTTTGACTTTCCCTTAGAACTGTGTGTGGCAAACATTGTTTCAGCCATCAAGGAACACTTCCA
GCATAAGCGAGACACACACACCTTGAAAAAGATTTACCTGGTGGGCCTACCTGCCAAGGTTGCCAGGGCC
TTTGCTGAAGCTGTCAAGACTACATATAAAGACTCCCTTTCCCACACAGCTTTCCCATCCAGTTTAAAGG
CTTTAGTACCACTTGGGAAAACGCCCCAGAAACAGGGCAGTCTGCTGGTGTCACCAGAAGGCCTGAGAAT
CCGCCTGGTAGAAGAAGGCGTGCAGAATGCTACGACCCATGCCATTGTGAACTCTATTTCCCCGGATCTT
AAACTCAACAAAGGACCCCTTTCTCAGGCCTTCTTGGAAAAGGCTGGGCCAAAACTCCAGGAGGAATTGA
CCAGGTCAGGACAAGGGGTCTCTGTTGATGTGGGCACAATTCTTCAAACCAGTGGCTGTAATCTCAACAG
CCGCCACGTCTTCCATGTGGTGCCTCCACCTTGGAAAAGCAACAACAGTGCATGGTCACTAAAGATCATG
AAAAACATCATCCGTGACTGCCTGAAGACCACCGAGAACCTGTCTCTACAATCGATTGCATTTCCAGCAA
TAGGAACGGGAAATTTGAGGTTTCCTAAACCTGAATTTGCTAAATTAATAATTTCAGAAGTGCTCAAATT
TAGTAGCAGGAACCAACTGAAAACTTTACAAGAGGTTCAGTTTCTGCTGCACCCGAAAGACCATGAAAAC
ATTCAGGCATTTTCAGATGAATTTGACAAGAGAAATAATGGAGATCCTAGTGACAAAAATCCCAAGGCTG
AAGACACACAAGGTATCTATGGGAGCCTTTCCAGCCCTACTTTAGGAATGCATGAAATGAATATTGGTCC
AATCCTCTTCCAAGTGGCCACTGGGAACATCATCAAAGAAGTGGCAGATGTGATTGTCAATTCAACAACA
CTCACATTTGATCTCAAATCAGGGGTCTCCAAAGCAATTTTGGAAGGTGCAGGACAAAATGTGGAGCAAG
AATGTTCTCTCTTGGCTAAACAGAGTAACCATGGGTATATAGTCACTGGAGGTGGACTATTGCAATGTAA
GAACATTATTCATGTTGTTGGTGGGAATGATGTCAAGAAATCGGTTTCCTGTGTTTTGGAAGAATGTGAA
CAACGGAATTACTCATCCATTTGCCTACCAGCTATTGGCACAGGAAATGCTCAACAGGACCCAAACGTAG
TAGCAAAAGCGATAATAGATGCCATTGAAGAATTTGTCCAGAAAAAATCAGTGCAGGCTGTGAAGAGAGT
TAAAGTTGTTATCTTCCAGCCCCATATTCTGCAATTTTTTTACGACAACATGAAAGAAAGAGAAGGCTCT
CCAGCTCCCCCCAAGCAGTCGCCTGCCAAGCAGTCAGTGATGTCTAAGATTGCCTCCTTTCTTGGCTTTC
CCAAGCAAGCTTCCCCCAAAAAGAACACCCTGGTTTTGGAAAAGAAAATAGAGCACACAGTTTTCCAGGT
ATGTGGTTCAGGGGTAGACAGTGTGAACAAAACAATCTCCTGGCTAAAGGAACTGATTACCAAAGAGCAG
CTTTCCTACACCAATGACGATGAGTGTGTCAGTGACTTTGACATGGAGGAGTACGAGAAACTGAATGAGA
TTCAGAAGGAACTGAACATCACCATTGAGATGAACCAGAAGAAAACTTCGATTCAAGTTTCAGGAATTAG
CAGAGACGTGATAAAAGCTAGAGATGAGATTGAGGGCATGATCAAGAGCATTCGATTGGCTAAAGAAAAG
GAAAGCCAGGCAGACTACATCTCTACATATGTGGAATGGCAGTATATTGATAAAAACATCACACAGTGTT
TTGACAAAATGACCAACATGAAGTTGGAGGTTGCATGGAAGGCCAAGAAGAAGGACACGGTTGTCCAAAT
TCACAATCAGGATTTCACGGTGGACTTGAGCACAAACACAGCCACCGCTCCCCAAGGCCAGACTTTCACT
GTTCAGCGCCTCGTCAAAGCTGAAGCTGAAATCCCTGCCAATTGGAGTGACATGAAGCAGGACAAATTGC
TTCTGGTGAATCTGCAAACCAGTGATCCCGAATACAACATGGTGGCAAGCGCCTTCCGTCAGACCTGCTC
AAACTTTTTCATAGAGAAGATTGAAAGGATTCAGAATCCAGCTCTTTGGAGAAGGTATCAGGCATACAAA
AAAAGTATGGATGAAAAGAATGGCAATGTAAGAAATGAGAAGCATCTCTTCCATGGGACAGAGGCTAGCT
CTCTACCACAGCTCAACAGTAATGGATTTAACCGCAGCTATGCTGGGAAGAACGCTACTGCCTACGGGAA
AGGAACCTATTTTGCTGTCAAAGCTTCCTATTCTGCCTGTGACACATATTCCAGACCAGACACCAATGGG
AGAAAGTATATGTATTATGTGCGGGTTCTCACTGGAAACTACACGAATGGAAACGCGTCACTGATTGTGC
CCCCCTCGAGGGACCCTCAAAATGCTGCTGACTTGTATGACACCGTCACAGATAATGATAAAAATCCAAG
TATATTTGTAGTGTTTTATGACAACCAAACGTACCCTGAGTATCTTATCACATTTAGGCAGTAA

Translation (1817 aa):
MAASGSFPLLVEGSWGPDPPKNLINKLQVYFQSRKKSGGGECEVVPEPGNPARFRVLFSPEDVRQNVLER
GNHELVWQEKGTFKLTVLMPTDPEEASASKKSRKESPEEESKTKEDAVKQGDLDITHSPSSGSEKTEDVP
KECENISSMVAFENLPEKVSEMVLTILVENISGLPSDDFKVEVNRDFAVAVVTFQKPIDIKKFIVDCISH
RSNQQLQLAPRLLETTNVVRVENLPPGVDEYQLQLFFENPFNGGGRVARVECFPEESSALVEFCDSKVLD
TVMAKTHSYNKMPLSVFPYYPSLGTALYGEEKPLIKLPASFQESLDLPLWKFFQKNNHLIEEINNEMRCC
HCELTWSEINGKLTIRPAATLVNHRLSIKTWQRDASAVLSGIKSKYGVELFEVCSPVWDIIKHELESGDD
RVLVEFEKESLNIAGKSEDVQGMSQKIRELIESTTEKLRREEQSLKEKVAISPGKHYLLHHSGFLKDLSK
GFPEMEISYDATAQFLYLKGFRADVYKVKCDIQEKVFSMAQKDVQVSSEVFEFLQQVDSQRLSKSLFEAQ
NILAIYELKGTALFLVGSSFKDLAEAETKMLSALSHKQIEVEDKEVLISNGWKKKVHPLQKRHSSCATII
VQNELTSETPAKVIVTGCVKEVNEIHRQLFEYLENNMKVERALKIKPSLIVDYLRTDKRLLSKIKKAHVY
VHFKPKDNPNSILLTGCKSKVLECMNLVKEIQDSVCVQRFQTDKAGVRHFFKDKESYYKTEIGRQFGCVI
ELEEDREEKGEEEDGEEEEGEEEGESSINEQKCHLQRDIAPGVKLFVLEEDLSRFPVDVVVNAANENLKH
ISGLAQALSKAAGPELQTECDQIVKEGGVVLPGNAVISKAGKLPCHHVIHAVGPRWKGDKVLECVSLLKK
VVRQSLSLAEEHRCRSIAMPAVSAGIFDFPLELCVANIVSAIKEHFQHKRDTHTLKKIYLVGLPAKVARA
FAEAVKTTYKDSLSHTAFPSSLKALVPLGKTPQKQGSLLVSPEGLRIRLVEEGVQNATTHAIVNSISPDL
KLNKGPLSQAFLEKAGPKLQEELTRSGQGVSVDVGTILQTSGCNLNSRHVFHVVPPPWKSNNSAWSLKIM
KNIIRDCLKTTENLSLQSIAFPAIGTGNLRFPKPEFAKLIISEVLKFSSRNQLKTLQEVQFLLHPKDHEN
IQAFSDEFDKRNNGDPSDKNPKAEDTQGIYGSLSSPTLGMHEMNIGPILFQVATGNIIKEVADVIVNSTT
LTFDLKSGVSKAILEGAGQNVEQECSLLAKQSNHGYIVTGGGLLQCKNIIHVVGGNDVKKSVSCVLEECE
QRNYSSICLPAIGTGNAQQDPNVVAKAIIDAIEEFVQKKSVQAVKRVKVVIFQPHILQFFYDNMKEREGS
PAPPKQSPAKQSVMSKIASFLGFPKQASPKKNTLVLEKKIEHTVFQVCGSGVDSVNKTISWLKELITKEQ
LSYTNDDECVSDFDMEEYEKLNEIQKELNITIEMNQKKTSIQVSGISRDVIKARDEIEGMIKSIRLAKEK
ESQADYISTYVEWQYIDKNITQCFDKMTNMKLEVAWKAKKKDTVVQIHNQDFTVDLSTNTATAPQGQTFT
VQRLVKAEAEIPANWSDMKQDKLLLVNLQTSDPEYNMVASAFRQTCSNFFIEKIERIQNPALWRRYQAYK
KSMDEKNGNVRNEKHLFHGTEASSLPQLNSNGFNRSYAGKNATAYGKGTYFAVKASYSACDTYSRPDTNG
RKYMYYVRVLTGNYTNGNASLIVPPSRDPQNAADLYDTVTDNDKNPSIFVVFYDNQTYPEYLITFRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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