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Report for CCDS36842.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36842.3 Reviewed, update pending Mus musculus 14 Asb14 23 108 98 CCDS HistoryNCBI Gene:142687Re-query CCDS DB by CCDS ID:36842.3Re-query CCDS DB by GeneID:142687See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 36842.2
The coding region has been updated to represent an alternate splice site between exons 3 and 4 which includes an intron with TT^AG splice junctions that is conserved in other species. The update also extends the N-terminus by 129-aa, and changes the C-terminus.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 36842.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239004.1 ENSMUSP00000159012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239004.1Link to Ensembl Protein Viewer:ENSMUSP00000159012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239004Re-query CCDS DB by Protein ID:ENSMUSP00000159012
Original member Current member NCBI NM_080856.5 NP_543132.4 Pending alive Link to Nucleotide Sequence:NM_080856.5Link to Protein Sequence:NP_543132.4Re-query CCDS DB by Nucleotide ID:NM_080856Re-query CCDS DB by Protein ID:NP_543132Link to BLAST:NP_543132.4

Chromosomal Locations for CCDS 36842.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 26897683 26897804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26900423 26900478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26900847 26900978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26901067 26901225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26903243 26903488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26911297 26911468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26911811 26912354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26914177 26914371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGATCCCTCCGGCAGTGACGAGGATGCAGATGCCGACTTTGACACCCAGGTCATCATCCAACAGAGTC
TGCTGGATGTTTACAAGCCAGGGATAGCTCAGCACACGCCAGAAGCGGCGAGACTCCATTCCTTCCCAAG
TGATGATTATAAGAAGATAGCTGAAGCCATCGAGACAGGTAAGGAAGATGCATTGGCAGGCTTTGCCAAG
TACCATCCAGCCTTTGATGAAGCCAATGGGAATGGCTGGCTTCCTCTGCATAAGGCAGCAGTGCAGTTAA
ACAAGAACATCTTAGAAATAACCATGAACGCTTCCGAACCCAGTACGTGGGAACGAACCACTCACAACGG
TGAAACAGCACTTTTTTTGGCTGTCAGCAGTAGCCTCCTGGAAAACGCCCACTTTCTCCTTCTCAAAGGC
TGTAATCCAAACGCTAAAACTTCTGAAGGCAATTCTCCTCTTCTTACAGCTGTTCTGAAAGACGCCTACG
ACATGGCCACCTTGCTGATCAGCCATGGAGCAGATGTCAATCTCCGATGTGCCAATGAGAGGACAGCTCT
CCATGAAGCTGCCAAGCTGGGCAGACTGGACATGGTAAAACTGATGCTGGCTTCTGGAGCATACCCAGAT
GCACGGAGCTCCTACGGATTCACGCCCCTTGCCCTCGCTGCTCAAGGTGGACACACTGGGATCATGCAAC
TACTACTGCAGAAAGGAGCTGACGTTCACAGTCAGGCCTCTGACTCGTCCTCTGTGTTACTTGAAGCTGT
TAGAGGAGGGAATCCGGAAGCTGTGAGTCTGTTGTTAGAGTATGGAGCTGATGCCAACATTCCTAAGAGT
TCAGGCCACCTGCCCATCCACGTGGCAGCTGACAAAGGCCATTTCCTAGCTCTAAAGGTATTGGTCCCAG
TCACAGACATCGCAGCCATCAAGAAGAGCGGGATCAGTCCGGTTCACTGCGCAGCAGCTGGGGCGCACCC
CCACTGCCTGGAACTTCTCATTCAGGCTGGATTTGATGTGAATTTCATGCTGGATCAGAGAATCCGTAAA
CATTATGATGATCAACGGAAGTCAGCCTTGTATTTTGCTGTTTCAAACGGTGACCTCCCTTCAGTTAAGC
TGCTTCTGAGTGCTGGAGCTCTACCCAATCAAGACCCAGTCAACTGCCTACAGATAGCTCTTAGGATGGG
CAACTATGAGCTCATAAGTCTATTACTGAGGCACGGGGCCAACGTCAACTACTTCTGCCGCGTTAACCCT
TTGCATTTCCCATCAGCGCTACAATACACATTGAAAGATGAAGTCATGCTCAGGATGCTGTTGAATTATG
GCTATGACACTGAGCGATGTTTTGATTGTCCTCATGGAGAAAGGGTTCATCGGTTTTGTACTTTTGAAGG
CTGGACATCTACAGTTATTAAAGATACTATGTTTTGTGAAGTCATAACTTTGTCATGGCTACAGCATCTC
TCTGGGAAAGTTGTTCGTGTGATGCTTGATTATGTTGATCAAGTTCAAATCTGTTCAAAATTGAAAGCTG
TGCTGGAAAAACAAAGGCTCTGGCCAGAAATACATTTTATCTTGAGTGAGTATCGTTCTCATAGAAAATT
CCTACCAAAACACTAA

Translation (541 aa):
MDPSGSDEDADADFDTQVIIQQSLLDVYKPGIAQHTPEAARLHSFPSDDYKKIAEAIETGKEDALAGFAK
YHPAFDEANGNGWLPLHKAAVQLNKNILEITMNASEPSTWERTTHNGETALFLAVSSSLLENAHFLLLKG
CNPNAKTSEGNSPLLTAVLKDAYDMATLLISHGADVNLRCANERTALHEAAKLGRLDMVKLMLASGAYPD
ARSSYGFTPLALAAQGGHTGIMQLLLQKGADVHSQASDSSSVLLEAVRGGNPEAVSLLLEYGADANIPKS
SGHLPIHVAADKGHFLALKVLVPVTDIAAIKKSGISPVHCAAAGAHPHCLELLIQAGFDVNFMLDQRIRK
HYDDQRKSALYFAVSNGDLPSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNP
LHFPSALQYTLKDEVMLRMLLNYGYDTERCFDCPHGERVHRFCTFEGWTSTVIKDTMFCEVITLSWLQHL
SGKVVRVMLDYVDQVQICSKLKAVLEKQRLWPEIHFILSEYRSHRKFLPKH


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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