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Report for CCDS9080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9080.1 Public Homo sapiens 12 SLC5A8 24 110 108 CCDS HistoryNCBI Gene:160728Re-query CCDS DB by CCDS ID:9080.1Re-query CCDS DB by GeneID:160728See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536262.3 ENSP00000445340.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536262.3Link to Ensembl Protein Viewer:ENSP00000445340.2Re-query CCDS DB by Nucleotide ID:ENST00000536262Re-query CCDS DB by Protein ID:ENSP00000445340
Original member Current member NCBI NM_145913.5 NP_666018.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145913.5Link to Protein Sequence:NP_666018.3Re-query CCDS DB by Nucleotide ID:NM_145913Re-query CCDS DB by Protein ID:NP_666018Link to BLAST:NP_666018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666018.3 610 Q8N695 610 100% 0 0

Chromosomal Locations for CCDS 9080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 101157279 101157401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101158249 101158328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101161974 101162077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101166494 101166699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101168096 101168182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101180029 101180096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101182803 101182915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101184134 101184222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101187386 101187515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101190468 101190608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101193625 101193779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101195095 101195162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101202164 101202215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101204500 101204565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101209498 101209848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGACACGCCACGGGGCATCGGCACCTTCGTGGTGTGGGACTACGTGGTGTTCGCGGGCATGCTGGTCA
TCTCGGCCGCCATCGGCATCTACTACGCCTTCGCTGGGGGCGGCCAGCAGACCTCCAAGGACTTCCTGAT
GGGCGGCCGCAGAATGACCGCAGTGCCCGTGGCGCTGTCCCTCACCGCTAGCTTCATGTCAGCCGTCACT
GTCCTGGGCACCCCCTCCGAGGTCTACCGTTTTGGGGCCATTTTTAGCATCTTTGCCTTCACCTACTTCT
TTGTGGTGGTCATCAGCGCGGAGGTCTTCCTCCCGGTGTTCTACAAACTGGGAATTACCAGCACCTACGA
GTATTTAGAACTTCGATTTAACAAATGTGTTCGTCTCTGTGGAACAGTCCTCTTCATTGTTCAAACAATT
CTGTATACTGGAATTGTTATTTATGCCCCTGCCCTGGCTTTGAATCAAGTCACAGGATTTGATCTGTGGG
GCGCGGTAGTGGCAACGGGGGTGGTCTGCACATTCTACTGCACACTGGGTGGTCTTAAAGCAGTTATCTG
GACAGATGTTTTTCAAGTTGGGATCATGGTGGCTGGATTTGCATCCGTGATTATACAGGCTGTGGTGATG
CAAGGTGGAATCAGCACTATTTTAAATGATGCCTATGATGGTGGAAGATTAAATTTCTGGAATTTTAATC
CTAACCCTTTGCAAAGACACACCTTCTGGACAATTATTATAGGAGGGACCTTCACATGGACCAGCATCTA
CGGTGTCAACCAATCCCAGGTGCAGAGATATATTTCTTGTAAAAGCAGATTCCAGGCAAAACTGTCTCTC
TACATCAATCTTGTGGGACTCTGGGCAATCCTCACATGCTCAGTGTTTTGTGGGCTCGCCCTATATTCCA
GGTACCATGACTGTGATCCTTGGACAGCCAAGAAAGTGTCTGCACCAGACCAGCTCATGCCTTATTTGGT
ACTGGACATTCTGCAAGATTATCCAGGACTTCCTGGACTTTTTGTGGCCTGTGCTTACAGTGGGACATTA
AGCACAGTGTCCTCCAGTATTAATGCCTTAGCAGCAGTAACTGTGGAAGATCTAATCAAACCTTACTTCA
GATCGCTCTCAGAAAGGTCTCTGTCTTGGATTTCCCAAGGAATGAGTGTGGTGTATGGAGCCCTGTGTAT
TGGAATGGCTGCGCTGGCGTCACTTATGGGAGCTTTGTTGCAGGCAGCACTCAGCGTATTTGGTATGGTT
GGTGGACCACTTATGGGCCTGTTCGCTTTGGGCATTTTGGTTCCCTTTGCCAACTCAATTGGAGCACTTG
TTGGTCTGATGGCTGGATTTGCCATTTCTCTATGGGTTGGAATTGGAGCTCAAATATATCCTCCACTTCC
TGAGAGAACATTGCCATTGCACCTTGATATCCAAGGCTGTAACAGCACCTACAATGAGACAAATTTGATG
ACAACCACAGAAATGCCATTTACTACTAGTGTTTTTCAAATATACAATGTTCAAAGGACTCCACTGATGG
ATAACTGGTATTCTTTATCATATCTGTACTTCAGCACTGTTGGAACTTTGGTAACATTATTAGTGGGGAT
ACTTGTCAGTTTATCAACAGGAGGAAGAAAACAGAACTTAGACCCCAGATACATACTAACCAAAGAGGAC
TTTTTATCCAATTTTGATATTTTTAAGAAAAAGAAGCATGTTTTGAGCTATAAATCACATCCAGTGGAAG
ATGGTGGAACTGATAATCCTGCTTTCAACCACATTGAATTGAACTCAGATCAGAGTGGCAAGAGCAATGG
GACTCGTTTGTGA

Translation (610 aa):
MDTPRGIGTFVVWDYVVFAGMLVISAAIGIYYAFAGGGQQTSKDFLMGGRRMTAVPVALSLTASFMSAVT
VLGTPSEVYRFGAIFSIFAFTYFFVVVISAEVFLPVFYKLGITSTYEYLELRFNKCVRLCGTVLFIVQTI
LYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVIWTDVFQVGIMVAGFASVIIQAVVM
QGGISTILNDAYDGGRLNFWNFNPNPLQRHTFWTIIIGGTFTWTSIYGVNQSQVQRYISCKSRFQAKLSL
YINLVGLWAILTCSVFCGLALYSRYHDCDPWTAKKVSAPDQLMPYLVLDILQDYPGLPGLFVACAYSGTL
STVSSSINALAAVTVEDLIKPYFRSLSERSLSWISQGMSVVYGALCIGMAALASLMGALLQAALSVFGMV
GGPLMGLFALGILVPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGCNSTYNETNLM
TTTEMPFTTSVFQIYNVQRTPLMDNWYSLSYLYFSTVGTLVTLLVGILVSLSTGGRKQNLDPRYILTKED
FLSNFDIFKKKKHVLSYKSHPVEDGGTDNPAFNHIELNSDQSGKSNGTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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