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Report for CCDS4489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4489.1 Public Homo sapiens 6 FAM217A 24 110 108 CCDS HistoryNCBI Gene:222826Re-query CCDS DB by CCDS ID:4489.1Re-query CCDS DB by GeneID:222826See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274673.8 ENSP00000274673.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274673.8Link to Ensembl Protein Viewer:ENSP00000274673.3Re-query CCDS DB by Nucleotide ID:ENST00000274673Re-query CCDS DB by Protein ID:ENSP00000274673
Original member Current member NCBI NM_173563.3 NP_775834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173563.3Link to Protein Sequence:NP_775834.2Re-query CCDS DB by Nucleotide ID:NM_173563Re-query CCDS DB by Protein ID:NP_775834Link to BLAST:NP_775834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775834.2 508 Q8IXS0 508 100% 0 0

Chromosomal Locations for CCDS 4489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4068696 4069920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4073275 4073342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4073433 4073507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4074443 4074456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4074577 4074661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 4077355 4077414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGGGAGAAGAAATGAGAACTGTGCTAACAGCCTACGTGTGTCAAACATCTCTCAGGAGAACTTATCTC
ACTGGAATTTGGATTCAGAAGTACCTGTTTCTGAAAATAAAAACCTCCCAGCTGGAAGGGATGGAGCAGC
AGGTGGCAAAATTAACAAGAACTATTTGGAAATTCCAGTGGAGCAACTGATGCTAGAACCTAATTTGTCG
GTGCATAGTCAAAAAAGTACACAGAATAGTAAACAAGGGATCTTTCAATTATGGAATTGTCCTCTTAATG
AAGGAAGTACCATAGAGAAGAGGGAATTCAAAAAATCTTCAGTGGAAACTGGCTTTAATGTAATCAATCA
TCCTATAAGGGTCTTCACTCTGAACCACCCATTAACAATTGCTTCAGTTGATAAGCAAGTTGGTCCTTAC
CCTGGACTGCCAATGCCATTAGGTCTCTGCTGGCCCTATGCTGATGGAGACTTTTTTAAGAACAGAAATG
AGATTCATGTTAGTTCATGTTCAACTATAGAAAACAATGATGGTGAAACATTACCTGCTCCAAATTGGAA
TTTGAAACATGGAAACAGCAGTGTGGAAGAAAATTTCACAGATGAAAGTGATTTATCAGAAAATGAGAAG
ACAAATGATACTTTACTCAGCTATTTTAAAAAGGTGGACCTGAACTTGAAGCCAGAAACAATAAAAAATG
TTGAGGAACCTTTCACCGAGGAGCCAAATGAAGTATTTCCATATCCTGATTTTCTCCCTCCTCCTTTCAG
TGCTCTAGACTTGCACAATTTAGCCCTCTCCAAATCTGACAATTGGAAAGTGACAGTGGACCCTGCAGAA
ACCTCTGTTGAACACTTGATAACTCGTTTACTGGAACTAGAACGATTACAACATATGACTATTCAAAAAG
AGAGGCCAAGACTACAAACGACTTTCTGTACTCCAGCAGTTACTGAACGACCCTCTTCCTCCAAAGCTAC
ACCAAAAGTGAGACAGCCAAAACTTTGCGACTCTTTGAGTCTTCAGATACCTTGTGTAGATAAAAGTCAA
GAAAAAAGTAAAAACAACTCTGGTTCTTGTAAGCTTGAACAAAATGCTTTAAAACGGAATTGGAGCAATG
CTGGCAAATATAGATGGAATTCTAGACCACTGTCTCTAAAAAGTTCTTCCACCCCAAAACAATTGATTGA
AACTTATGATAAGAATCCCAAAAGTTCTATTTTAAGTCCATGCCAAGAACTCTCATTCAAACCTACTATT
GGCCATACAAATCAATCAATGGTTAAAATGGTCTCCACAAGATGTCTGCCATGGAGGTCTCCAATGCCAG
TTTCACCTATACCTCTGACTTTTCCCGAAAATCAGAAGGAAGAAATTAAGGCACCGAAGAGAAACTTTGG
GACCAAAAAGAAACTTTACCGACAAAATATAGTGTTGAATAGACCATTCTCTATTCAGAAGCTAAACTGT
TTGTCGCCTTCCCTTATTGCTAAGGATAAGTGCTGCTCACCCATTGAACAAAAATAA

Translation (508 aa):
MGRRNENCANSLRVSNISQENLSHWNLDSEVPVSENKNLPAGRDGAAGGKINKNYLEIPVEQLMLEPNLS
VHSQKSTQNSKQGIFQLWNCPLNEGSTIEKREFKKSSVETGFNVINHPIRVFTLNHPLTIASVDKQVGPY
PGLPMPLGLCWPYADGDFFKNRNEIHVSSCSTIENNDGETLPAPNWNLKHGNSSVEENFTDESDLSENEK
TNDTLLSYFKKVDLNLKPETIKNVEEPFTEEPNEVFPYPDFLPPPFSALDLHNLALSKSDNWKVTVDPAE
TSVEHLITRLLELERLQHMTIQKERPRLQTTFCTPAVTERPSSSKATPKVRQPKLCDSLSLQIPCVDKSQ
EKSKNNSGSCKLEQNALKRNWSNAGKYRWNSRPLSLKSSSTPKQLIETYDKNPKSSILSPCQELSFKPTI
GHTNQSMVKMVSTRCLPWRSPMPVSPIPLTFPENQKEEIKAPKRNFGTKKKLYRQNIVLNRPFSIQKLNC
LSPSLIAKDKCCSPIEQK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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