NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52035.1 Public Mus musculus 7 Crx 23 108 98 CCDS HistoryNCBI Gene:12951Re-query CCDS DB by CCDS ID:52035.1Re-query CCDS DB by GeneID:12951See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174318.7 ENSMUSP00000134400.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174318.7Link to Ensembl Protein Viewer:ENSMUSP00000134400.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000174318Re-query CCDS DB by Protein ID:ENSMUSP00000134400
Original member Current member NCBI NM_001113330.1 NP_001106801.1 Accepted alive Link to Nucleotide Sequence:NM_001113330.1Link to Protein Sequence:NP_001106801.1Re-query CCDS DB by Nucleotide ID:NM_001113330Re-query CCDS DB by Protein ID:NP_001106801Link to BLAST:NP_001106801.1

Chromosomal Locations for CCDS 52035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 15867780 15868427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15869343 15869494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15871144 15871276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 15872274 15872312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCTCAGTGGTTAAGAACACTGACTGCTCTTTCAAAGGTGCCCTCATCTGGGCCACAGTCTCTGAAGA
TCATGATGGCATATATGAACCCGGGGCCTCACTATTCAGTCAATGCCTTGGCTCTGAGTGGCCCCAATGT
GGACCTGATGCACCAGGCTGTCCCATACTCAAGTGCCCCTAGGAAGCAGCGGCGGGAGCGGACCACATTC
ACCAGGAGCCAGCTGGAGGAGCTGGAGGCCCTGTTTGCCAAGACCCAGTACCCGGATGTGTATGCACGTG
AGGAGGTTGCTCTTAAGATCAATCTGCCTGAGTCCAGGGTCCAGGTCTGGTTCAAGAATCGTAGGGCGAA
ATGCAGACAGCAGCGACAGCAGCAGAAACAGCAACAGCAGCCCCCGGGGGCACAGACCAAGGCTCGTCCT
GCGAAGAGGAAGGCAGGGACATCCCCGAGACCCTCTACAGATGTTTGTACAGATCCTTTGGGCATCTCAG
ATTCTTACAGCCCATCTCTGCCTGGCCCCTCAGGTTCACCTACCACAGCAGTGGCCACCGTGTCCATTTG
GAGTCCAGCCTCAGAGGCTCCTTTGCCTGAGGCCCAGAGAGCCGGCCTAGTGGCTTCTGGGCCCTCTCTC
ACCTCAGCCCCTTATGCCATGACCTATGCCCCGGCTTCTGCTTTCTGTTCTTCCCCTTCAGCTTATGCAT
CTCCAAGTTCCTATTTCAGTGGGTTGGATCCCTACCTTTCGCCCATGGTGCCCCAACTTGGGGGTCCGGC
TCTCAGCCCCCTCTCAGGCCCCTCTGTGGGGCCATCCCTGGCCCAGTCCCCCACCTCCTTGTCAGGCCAG
AGCTATAGCACCTACAGTCCTGTGGACAGCCTGGAATTCAAGGACCCCACAGGCACCTGGAAATTTACCT
ACAATCCCATGGACCCTCTGGACTACAAAGATCAGAGTGCCTGGAAGTTTCAGATCTTGTAG

Translation (323 aa):
MAQWLRTLTALSKVPSSGPQSLKIMMAYMNPGPHYSVNALALSGPNVDLMHQAVPYSSAPRKQRRERTTF
TRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGAQTKARP
AKRKAGTSPRPSTDVCTDPLGISDSYSPSLPGPSGSPTTAVATVSIWSPASEAPLPEAQRAGLVASGPSL
TSAPYAMTYAPASAFCSSPSAYASPSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQ
SYSTYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH