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Report for CCDS52857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52857.1 Public Mus musculus 9 Atosa 23 108 98 CCDS HistoryNCBI Gene:235493Re-query CCDS DB by CCDS ID:52857.1Re-query CCDS DB by GeneID:235493See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170846.7 ENSMUSP00000129319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170846.7Link to Ensembl Protein Viewer:ENSMUSP00000129319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170846Re-query CCDS DB by Protein ID:ENSMUSP00000129319
Original member Current member EBI ENSMUST00000215370.1 ENSMUSP00000149021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215370.1Link to Ensembl Protein Viewer:ENSMUSP00000149021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215370Re-query CCDS DB by Protein ID:ENSMUSP00000149021
Original member Current member NCBI NM_001113283.1 NP_001106754.1 Accepted alive Link to Nucleotide Sequence:NM_001113283.1Link to Protein Sequence:NP_001106754.1Re-query CCDS DB by Nucleotide ID:NM_001113283Re-query CCDS DB by Protein ID:NP_001106754Link to BLAST:NP_001106754.1
Original member Current member NCBI NM_001359816.1 NP_001346745.1 Accepted alive Link to Nucleotide Sequence:NM_001359816.1Link to Protein Sequence:NP_001346745.1Re-query CCDS DB by Nucleotide ID:NM_001359816Re-query CCDS DB by Protein ID:NP_001346745Link to BLAST:NP_001346745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106754.1 1075 Q69ZK7-1 1075 100% 0 0
NP_001346745.1 1075 Q69ZK7-1 1075 100% 0 0

Chromosomal Locations for CCDS 52857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 74953815 74953830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75004265 75004449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75006288 75006490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75006962 75007087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75008651 75010466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75012941 75013054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75015844 75015923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75017038 75017146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75018997 75019155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75023585 75023653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75025651 75025847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75031515 75031668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGAAGCCAGACCGAGATGCCTTGGATGAGTATTTTGAATATGACGCAGAGGAGTTCTTGGTCTCTTTGG
CCTTGCTGATAACTGAAGGACGAACCCCGGAGTGCTCTGTGAAAGGCCGTGCAGAGAGTTTCCACTGCCC
TCCAGCGCAGTCTCGCTTCCCAGGAACGGCCAGACATGAATGCAGCGACAAGCTGGCCCAGTGTCGCCAA
GCCAGACGAACCAGATCTGAGGTCACACTGTTGTGGAAAAATAATCTCCCAATCATGGTGGAGGTGATGC
TCCTGCCGGATTGCTGCTACAGTGACGAGGGGCCTAGTACAGAGGGGGCAGATCTGAATGATCCCGCCAT
TAAGCAAGACGCACTGTTACTGGAGAGGTGGATCTTGGAGCCAGTTCCCCGACAGAATGGTGACCGCTTC
ATCGAAGAGAAGGCACTTCTGCTGGCTGTCAGATCATTTGTGTTTTTTTCTCAGTTAAGTGCTTGGCTGA
GTGTTTCTCATGGTGCTATTCCACGAAACATTCTTTACAGAATCAGTGCTGCGGATGTCGACCTGCAGTG
GAGTTTTTCACAGACTCCAACTGAGCATGTGTTTCCCGTCCCCAATGTCTCTCACAATGTGGCCTTGAAA
GTCAGCGTTCAGTCCTTACCCAGACAAGCTCATTATCCGGTTTTGACCTGTAGTATTCATACTAACATTG
GTCTGTATGAGAAGAGAATTCAAGAACAGGAGCTTAGAGCCTGTCAGCACCATGGCCCTGGTGAGGTGGA
GTACCGTTGTCCCAGCAGCTCACAGAGCCTATGCAGCAAGCACACATGGACCATGGCACCCGTGAGTGCC
CTGCACGTCAGAAGTGGCATGCCTCCCGAGTACACTGCAGCCATTAGAAATGTCAGGCTCTGCCCAGGCA
CAGGCAGCAAGTCTGACCAGGGGGCACCTCAAGCCAGTGTCCTGGGCTTCAGTGGCACTGGGGGAGAAGT
GAGGTCACAGGAGGCGTCAGTGAGAACGTTCAAATCACTGCCTGTGGTCGATTCCAGTGTCTCCAGCTGT
CAGAGCTCTCGGCAGCCAGTAGGGGAACCTAACCCTTTAATGGACTCCTTGATTCAGGATCGACAAGAAG
TCATTGCCAGGATTGCTCAGCACTTGATTCACTGTGACCCCAGCTCCTCTAGAATGTCTGAACTCCCCTT
TAACACCCAGGAGTCCACGTCACTTAGCCCAAAGCTTCACCCAGTTTCACAGGAAAGTGGGTGTGTGAGG
AGATATAAAGAAGCATTCTCTGTCTCCTTTGGGAGTCCAGAGTTTGGCTCCCCAGGAGACAGCAGGGAGG
GGAAAGTCAGAGAGAAGTCAGAAACCAGGCCAGGAGAAACTTGCACTTCTCACAGTCTGTACCCTCGCCA
GCCTGCTGGGGAGGCGAACCCACTGATTGGCTCTTTACTCCAGGAGCGGCAGGACGTCATAGCCAGGATT
GCACAGCACCTAGAACACATCGACCCCGCAGCTCACATTCCCCGGCCTGCATTCAGCAAGCACGACTCCA
ATTCCATTCCTTCTAAAGTGTTCAGGAGTTCATTTGATGACAAAACCTTGTTGAAGAAGGGCAGAGAGAA
TGTCTCTGTCTCTGTGTCTCATACAGAAGTGTCCTTATTGGGAGACAGAGGTGATGGGGAAAGCCTCAAA
CCTAGTAAATGCTTGCGATCTTTCAAATACAGCCCTCAAGAAAAGCCTTTGAAACCTGAAGTAAGAACTC
AGCATCAGAACCATCCTGATAGCATCACCCCCACAGCCAGGCAGGAGCTGCTGAACAAGGCTGCTGGCTT
ACTAACTTCCTCTAACACAGCTCTCTGCAAAGAAAGCAGCTTGGGTTTGGTTAGCAGATTGGAAAGTACA
TCTTGTAAATTACAACTTAAGGAGCAAGAAATGAGCCATGAAACTGAGAAACAGTGTTTGCATTGCAACA
GTATTGACAAACAGATTTGCACAAATACATGTACGGAGAAAATCAACGACGAGCATAGTCCAGGATCTCT
CCGTCATCTCCAGTGTGATGATTCAAAAGGTATTGACTCAAAACTAAAAGTGACTCTGCTGGAAATGCCT
GACAGTTTGAACAAGAACAAAACTAATTGTTCAAGTAAAGACTCCAAAAGATCCAAGACGTGTGAGCAAA
GCATTCGGGTTGGCACAGAAAATGACCTCAGTGAAGAGAATGAGGGTCCCGGAAGCACTGTATCAGACCG
ACTCAAAACTGAGCAGGAGGCAAAAAGGGACTCAGGTGCTGGAAAACCTCACAGCGTAAAGCACTGTTTG
TCTGCAGGCGAGAGGCTGCACAGCGCAGACATGTTGAGGACTACACTGAAACATTCAAGTGTCTGGAGGA
AACATAATTTTCATTCCTTGGATGGGACATCAACCAGAGCCTTTCATCCTCAGACGGGGCTGCCTCTCCT
CTCAAGTCCAGTTCCTCAAAGAAAAACACAGTCAGGCTGCTTTGATCTAGACGCGTCGCTGCTGCATCTG
AGAAGCCTATCCTCCAAAAGCTCTCGGCCATGCCTGAATATTGACGAGGACCCAGATGTTCATGAAAAAC
CTTTTTTGAGTTCAAGTGCTCCACCAATCACAAGTCTTAGTCTCCTAGGAAATTTTGAGGAATCGGTTCT
GAACTACCGTTTAGACCCCCTCGGCATAGTCGATGGCTTTACGGCCGAGGTGGGAGCCAGTGGGACTTTC
TGCCCAACGCACTTGACTCTGCCAGTGGAAGTGTCGTTCTACAGTGTTTCCGATGATAATGCTCCCTCGC
CTTACATGGGTGTGATTACTTTAGAGTCCCTTGGTAAAAGGGGTTATCGAGTACCTCCTTCAGGAACGAT
ACAAGTGACCTTATTCAATCCCAATAAGACTGTGGTGAAGATGTTTGTAGTCGTGTATGACCTACGAGGT
ATGCCAGCCAATCACCAGACATTCCTGAGACAGAGGACGTTCTCAGTTCCTGTTAAACAAGAGATGAAGA
GAAGTATTAACAAAGAGAACGTCCAGCACACGGCACAGTTACTACGCTACCTCATACACCTGAGGTTCCA
GAGTTCTAAATCTGGAAAGATCTACCTCCATAGAGATGTCCGGCTCCTGTTCTCTAGAAAGTCCATGGAG
GTCGATAGCGGTGCTGCGTATGAACTCAAATCCTACACTGAGTCGCCAACAAACCCTCAGTTTTCACCAA
GATGTTGA

Translation (1075 aa):
MKPDRDALDEYFEYDAEEFLVSLALLITEGRTPECSVKGRAESFHCPPAQSRFPGTARHECSDKLAQCRQ
ARRTRSEVTLLWKNNLPIMVEVMLLPDCCYSDEGPSTEGADLNDPAIKQDALLLERWILEPVPRQNGDRF
IEEKALLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWSFSQTPTEHVFPVPNVSHNVALK
VSVQSLPRQAHYPVLTCSIHTNIGLYEKRIQEQELRACQHHGPGEVEYRCPSSSQSLCSKHTWTMAPVSA
LHVRSGMPPEYTAAIRNVRLCPGTGSKSDQGAPQASVLGFSGTGGEVRSQEASVRTFKSLPVVDSSVSSC
QSSRQPVGEPNPLMDSLIQDRQEVIARIAQHLIHCDPSSSRMSELPFNTQESTSLSPKLHPVSQESGCVR
RYKEAFSVSFGSPEFGSPGDSREGKVREKSETRPGETCTSHSLYPRQPAGEANPLIGSLLQERQDVIARI
AQHLEHIDPAAHIPRPAFSKHDSNSIPSKVFRSSFDDKTLLKKGRENVSVSVSHTEVSLLGDRGDGESLK
PSKCLRSFKYSPQEKPLKPEVRTQHQNHPDSITPTARQELLNKAAGLLTSSNTALCKESSLGLVSRLEST
SCKLQLKEQEMSHETEKQCLHCNSIDKQICTNTCTEKINDEHSPGSLRHLQCDDSKGIDSKLKVTLLEMP
DSLNKNKTNCSSKDSKRSKTCEQSIRVGTENDLSEENEGPGSTVSDRLKTEQEAKRDSGAGKPHSVKHCL
SAGERLHSADMLRTTLKHSSVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDASLLHL
RSLSSKSSRPCLNIDEDPDVHEKPFLSSSAPPITSLSLLGNFEESVLNYRLDPLGIVDGFTAEVGASGTF
CPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVVYDLRG
MPANHQTFLRQRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSME
VDSGAAYELKSYTESPTNPQFSPRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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