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Report for CCDS39152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39152.1 Public Mus musculus 5 Cxcl9 23 108 98 CCDS HistoryNCBI Gene:17329Re-query CCDS DB by CCDS ID:39152.1Re-query CCDS DB by GeneID:17329See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113093.4 ENSMUSP00000108716.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113093.4Link to Ensembl Protein Viewer:ENSMUSP00000108716.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113093Re-query CCDS DB by Protein ID:ENSMUSP00000108716
Original member Current member NCBI NM_008599.4 NP_032625.2 Accepted alive Link to Nucleotide Sequence:NM_008599.4Link to Protein Sequence:NP_032625.2Re-query CCDS DB by Nucleotide ID:NM_008599Re-query CCDS DB by Protein ID:NP_032625Link to BLAST:NP_032625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032625.2 126 P18340 126 100% 0 0

Chromosomal Locations for CCDS 39152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92323799 92323906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92325064 92325148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92326750 92326876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92327963 92328023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGAAGTCCGCTGTTCTTTTCCTCTTGGGCATCATCTTCCTGGAGCAGTGTGGAGTTCGAGGAACCCTAG
TGATAAGGAATGCACGATGCTCCTGCATCAGCACCAGCCGAGGCACGATCCACTACAAATCCCTCAAAGA
CCTCAAACAGTTTGCCCCAAGCCCCAATTGCAACAAAACTGAAATCATTGCTACACTGAAGAACGGAGAT
CAAACCTGCCTAGATCCGGACTCGGCAAATGTGAAGAAGCTGATGAAAGAATGGGAAAAGAAGATCAGCC
AAAAGAAAAAGCAAAAGAGGGGGAAAAAACATCAAAAGAACATGAAAAACAGAAAACCCAAAACACCCCA
AAGTCGTCGTCGTTCAAGGAAGACTACATAA

Translation (126 aa):
MKSAVLFLLGIIFLEQCGVRGTLVIRNARCSCISTSRGTIHYKSLKDLKQFAPSPNCNKTEIIATLKNGD
QTCLDPDSANVKKLMKEWEKKISQKKKQKRGKKHQKNMKNRKPKTPQSRRRSRKTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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