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Report for CCDS15660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15660.1 Public Mus musculus 2 Phyh 23 108 98 CCDS HistoryNCBI Gene:16922Re-query CCDS DB by CCDS ID:15660.1Re-query CCDS DB by GeneID:16922See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027975.7 ENSMUSP00000027975.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027975.7Link to Ensembl Protein Viewer:ENSMUSP00000027975.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027975Re-query CCDS DB by Protein ID:ENSMUSP00000027975
Original member Current member NCBI NM_010726.2 NP_034856.1 Accepted alive Link to Nucleotide Sequence:NM_010726.2Link to Protein Sequence:NP_034856.1Re-query CCDS DB by Nucleotide ID:NM_010726Re-query CCDS DB by Protein ID:NP_034856Link to BLAST:NP_034856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034856.1 338 O35386 338 100% 0 0

Chromosomal Locations for CCDS 15660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4919070 4919144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4922828 4922886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4925598 4925708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4927350 4927518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4928671 4928752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4930713 4930894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4935969 4936118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4937676 4937810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4938307 4938360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGAATCTTACGCGCGCCGGCGCCCGGCTGCAGGTCCTTCTGGGACACCTCGGCCGACCCTCGGCCCCAA
CGATTGTAGCCCAGCCTGTATCAGGGTTGGCTTCCCCTGCCAGTTTCCAGCCTGAACAATTCCAGTATAC
TCTGGATAATAATGTCCTCACCCTGGAGCAGAGAAAATTTTATGAAGAAAATGGGTTTCTCGTCATTAAG
AATCTGGTATCTGATGATGACATTCAACGTTTTCGAGCAGAGTTTGAAAGAATCTGCAGAGAGGAGGTGA
AACCACCAGGGATCGTTATAATGAGAGATGTGGCCCTTGCAAAACAGGATTATATGCCAAGTGATAGGAT
GGTTTCAAAGATCCAGGATTTCCAAGAAGATGAGGAGCTCTTCAGATACTGCCTTCTCCCCGAGATTCTG
AAGTATGTGGAGTGTTTCACTGGACCCAATATTATGGCTCTGCATGGGATGCTGATCAACAAGCCTCCAG
ATGTTGGCAAGAAGACATCCCGGCATCCCTTGCATCAGGATCTGCACTATTTCCCCTTCCGACCTAGCAA
CCTAATTGTTTGTGCTTGGACAGCCATGGAGCACATTGACAGAAACAACGGTTGTCTGGTTGTGCTCCCA
GGTACCCACAAAGGCACTCTGAAGCCACATGATTACCCCAAGTGGGAGGGAGGTGTTAACAAAATGTACC
ATGGCATCCAAGACTATGACCCCAACAGCCCCCGGGTCCACCTAGTGATGGAAAAGGGCGATACTGTTTT
CTTCCACCCTCTGCTCATCCATGGATCTGGTCGGAACAAAACTCAAGGCTTCCGGAAAGCAATTTCCTGC
CACTTCGGCAGCTCTGACTGCCAGTGTATCGATGTGAGCGGCACCAGTCAAGAAAATATTGCAAGGGAAG
TTGTCGAGATGGCAGAGAAAAAGTATGGATTCCAAGGAGTCATGGACTTTAAGGACACTTGGATATTTCG
AAGCCGACTTGTGAAAGGAGAAAGAATAAACATTTGA

Translation (338 aa):
MNLTRAGARLQVLLGHLGRPSAPTIVAQPVSGLASPASFQPEQFQYTLDNNVLTLEQRKFYEENGFLVIK
NLVSDDDIQRFRAEFERICREEVKPPGIVIMRDVALAKQDYMPSDRMVSKIQDFQEDEELFRYCLLPEIL
KYVECFTGPNIMALHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLP
GTHKGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPRVHLVMEKGDTVFFHPLLIHGSGRNKTQGFRKAISC
HFGSSDCQCIDVSGTSQENIAREVVEMAEKKYGFQGVMDFKDTWIFRSRLVKGERINI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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