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Report for CCDS22480.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22480.2 Public Mus musculus 8 Farsa 23 108 98 CCDS HistoryNCBI Gene:66590Re-query CCDS DB by CCDS ID:22480.2Re-query CCDS DB by GeneID:66590See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22480.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003906.12 ENSMUSP00000003906.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003906.12Link to Ensembl Protein Viewer:ENSMUSP00000003906.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003906Re-query CCDS DB by Protein ID:ENSMUSP00000003906
Original member Current member NCBI NM_025648.3 NP_079924.2 Accepted alive Link to Nucleotide Sequence:NM_025648.3Link to Protein Sequence:NP_079924.2Re-query CCDS DB by Nucleotide ID:NM_025648Re-query CCDS DB by Protein ID:NP_079924Link to BLAST:NP_079924.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079924.2 508 Q8C0C7 508 100% 0 0

Chromosomal Locations for CCDS 22480.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84857035 84857181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84860906 84861043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84861127 84861225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84861312 84861430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84864058 84864150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84864231 84864359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84864437 84864552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84867377 84867461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84867549 84867648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84867750 84867918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84868009 84868086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84868224 84868338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84868866 84869004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGCGGATAATCCCGTTTTGGAGCTGTTGCTGCGGCGGCTGGAGGTAGCTGATGGCGGTCTGGACAGCG
CGGAGTTGGCTACGCAGCTGGGTGTGGAGCACCAGGCGGTGGTGGGCGCAGTGAAGAGCCTTCAAGCTCT
GGGTGAGGTCATTGAGGCTGAGCTTCGTTCTACCAAGTGCTGGGAGCTGACTACTGAGGGTGAGGAGATT
GCCCGGGAGGGCAGCCATGAGGCCCGTGTGTTTAGAAGCATCCCTCTCGAGGGCCTGGTGCAGAGTGAGC
TCATGCACCTGCCCAGCGGCAAGGTGGGCTTCAGCAAGGCCATGTCCAACAAGTGGATCCGAGTGGACAA
GAGTGCCGCCGACGGGCCCCGGGTGTTCCGAGTGGTGGACAGTATAGAGGATGAAGTGCAGAAGCGGTTG
CAGCTGGTCCAGGCAGGCCAGGCTGAGAAGCTGGCTGAAAAGGAACGGAATGAGCTCAGGAAGAGGAAGC
TGCTGACGGAAGTGATCCTGAAAACCTACTGGGTGAGCAAGGGCAAGGCCTTCAGCACAAGCGTGTCTAA
GCAGGAGGCAGAGCTGAGCCCAGAGATGATCTCCAGTGGCTCTTGGAGGGACCGACCTTTCAAACCCTAC
AACTTCTCTGCCCGTGGTGTGCTCCCAGATAGTGGCCACCTGCACCCCTTGCTCAAGGTCCGCTCTCAGT
TCCGACAAATCTTCTTGGAGATGGGGTTCACTGAGATGCCTACGGACAATTTCATTGAGAGCTCCTTCTG
GAACTTTGATGCACTCTTTCAGCCTCAGCAGCACCCAGCACGTGACCAACATGATACTTTCTTCCTGCGA
GACCCAGCTGAGGCCCTGCAGCTTCCAATGGGCTATGTCCAGCGCGTGAAACGGACCCACTCCCAGGGTG
GCTACGGCTCACAGGGCTACAAGTATACCTGGAAGCTGGAAGAGGCCCGGAAAAACCTGCTTCGCACACA
CACCACAGCAGCCAGCGCCCGCGCCCTCTACCAGTTAGCCCAGAAGAAGCCGTTTACACCAGCCAAGTAC
TTCTCTATTGATCGTGTGTTTCGGAATGAGACGCTGGACGCCACGCACCTGGCGGAGTTCCACCAGATTG
AGGGTGTAATAGCAGACCATGGTCTCACCCTAGGCCACCTCATGGGTGTGCTGAGGGAGTTCTTCACCAA
GCTGGGAATCACGCAGTTGCGCTTCAAACCAGCCTACAACCCCTACACAGAGCCCAGCATGGAAGTGTTC
AGCTACCACCAAGGTCTAAAGAAGTGGGTTGAAGTTGGCAACTCTGGGGTCTTCCGCCCTGAGATGCTCC
TGCCTATGGGGCTCCCTGAGAATGTGTCTGTCATTGCTTGGGGTCTCTCCCTGGAACGCCCAACAATGAT
CAAATATGGCATCAATAACATCCGAGAACTGGTGGGCCACAAGGTGAACCTGCAGATGGTATACGACAGC
CCTGTGTGCCGACTGGATATTGAGCCCAGGTCCTCAAAGACACAGGAGGCTGCATGA

Translation (508 aa):
MADNPVLELLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEI
AREGSHEARVFRSIPLEGLVQSELMHLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQKRL
QLVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKAFSTSVSKQEAELSPEMISSGSWRDRPFKPY
NFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLR
DPAEALQLPMGYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYQLAQKKPFTPAKY
FSIDRVFRNETLDATHLAEFHQIEGVIADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDS
PVCRLDIEPRSSKTQEAA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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