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Report for CCDS29860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29860.1 Public Mus musculus 19 Btrc 23 108 98 CCDS HistoryNCBI Gene:12234Re-query CCDS DB by CCDS ID:29860.1Re-query CCDS DB by GeneID:12234See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065601.12 ENSMUSP00000070728.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065601.12Link to Ensembl Protein Viewer:ENSMUSP00000070728.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065601Re-query CCDS DB by Protein ID:ENSMUSP00000070728
Original member Current member NCBI NM_001037758.2 NP_001032847.2 Accepted alive Link to Nucleotide Sequence:NM_001037758.2Link to Protein Sequence:NP_001032847.2Re-query CCDS DB by Nucleotide ID:NM_001037758Re-query CCDS DB by Protein ID:NP_001032847Link to BLAST:NP_001032847.2
Original member Current member NCBI NM_001286465.1 NP_001273394.1 Accepted alive Link to Nucleotide Sequence:NM_001286465.1Link to Protein Sequence:NP_001273394.1Re-query CCDS DB by Nucleotide ID:NM_001286465Re-query CCDS DB by Protein ID:NP_001273394Link to BLAST:NP_001273394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032847.2 605 Q3ULA2-1 605 100% 0 0
NP_001273394.1 605 Q3ULA2-1 605 100% 0 0

Chromosomal Locations for CCDS 29860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45363839 45363886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45423133 45423240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45456533 45456610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45471015 45471104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45502932 45503163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45507684 45507870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45512645 45512741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45513387 45513524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45514008 45514126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45515858 45516107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45517015 45517133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45518809 45518919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45519442 45519520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45527264 45527425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGACCCGGCAGAGGCGGTGCTGCAGGAGAAAGCGCTTAAGTTTATGTGCTCTATGCCCAGGTCTCTGT
GGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGC
ACTCACAGCTTTCCAGAATTCCTCAGAGAGAGAAGACTGTAATAATGGCGAACCCCCTAGGAAGATAATA
CCAGAGAAGAATTCACTTAGACAGACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTAT
GTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAAGCCAAACTTGCCAATGGCACTTCCAG
CATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTAT
TTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACC
AGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGCACG
GGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTC
GTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCA
GGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTGGGGACAGTACTTATTCAAAAACAAACC
TCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG
ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTA
AAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAGAT
CTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAG
TACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAGAGTGTGGGATGTAAATGCAGGTG
AGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGT
GACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGG
GTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTG
GAGATAGAACCATAAAGGTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCG
TGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAGGCTG
TGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGAT
TTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGGGAAAATTAAAGTGTGGGATCTTATGGCTGCTTT
GGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGGAGCATTCTGGAAGAGTTTTCCGC
CTCCAGTTTGATGAATTCCAGATTGTCAGTAGTTCACATGATGACACAATTCTCATCTGGGACTTCCTGA
ATGATCCAGCTGCTCACGCTGAACCGCCCCGCTCCCCTTCTCGGACATACACCTACATCTCCAGATAA

Translation (605 aa):
MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKII
PEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKAKLANGTSSMIVPKQRKLSASYEKEKELCVKY
FEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAEL
VCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIE
TIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ
YDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR
VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL
WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFR
LQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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