CCDS Report for Consensus CDS

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Report for CCDS51329.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
51329.1	Public	Mus musculus	4	Srrm1	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51329.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000084846.11	ENSMUSP00000081906.5	Accepted	alive
		NCBI	NM_001130477.2	NP_001123949.1	Accepted	alive

Chromosomal Locations for CCDS 51329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)

Genome Browser links:

Chromosome	Start	Stop
4	135321347	135321454
4	135322290	135322499
4	135323914	135324109
4	135324819	135325280
4	135327092	135327223
4	135329004	135329045
4	135329373	135329517
4	135331721	135331807
4	135332158	135332238
4	135337804	135338078
4	135340503	135340607
4	135340847	135341035
4	135342370	135342573
4	135343864	135343979
4	135344499	135344669
4	135346735	135346857
4	135347115	135347204
4	135353097	135353117

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGGACGCGGGATTCTTCCGCGGAACAAGTGCGGAGCAGGATAATCGGTTCAGCAACAAACAGAAGAAAC TCCTCAAGCAGCTGAAATTTGCAGAATGCTTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGT TATAAAGCCTTGGATAACCAAAAGAGTAACTGAGATCCTTGGATTCGAAGATGATGTTGTCATTGAGTTT ATATTCAACCAGCTGGAAGTGAAGAACCCAGATTCCAAAATGATGCAAATCAACCTGACTGGGTTTTTGA ATGGGAAGAATGCTAGAGAATTCATGGGAGAGCTGTGGCCCCTGCTGTTGAGTGCACAAGAAAATATCGC CGGAATCCCTTCTGCTTTCCTAGAGTTGAAGAAGGAAGAGATAAAGCAGAGACAAATTGAACAAGAAAAA TTGGCGTCTCTGAAAAAACAAGATGAAGATAAAGATAAGAGGGATAAGGAAGAAAAGGAAAGCAGCAGAG AGAAGAGGGAGCGGTCTCGCAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC CCCTGTCAGGAGAGAGAGAAAGCGCAGTCACTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGCCCT TCCCCTGCCCCAGAAAAGAAGGAGAAATCTCCAGAGCTCCCAGAGCCATCCGTGAGGATGAAGGACTCCT CAGTACAGGAGGCCACCTCTACAAGTGACATCTTGAAAGCTCCCAAGCCTGAGCCTGTACCAGAGCCCAA AGAACCGTCTCCAGAAAAAAATTCCAAAAAGGAAAAGGAAAAGACTCGACCAAGATCTCGGTCACGATCC AAATCTCGGTCTCGGACCCGATCTCGATCACCTTCTCATACTAGACCAAGACGGAGACATAGATCCCGAT CAAGAAGGCGGCCAAGCCCAAGACGACGACCATCTCCCCGAAGAAGAACTCCACCAAGACGGATGCCTCC TCCACCAAGGCACCGGAGGAGTAGGTCTCCAGGGAGACGAAGGAGGCGTTCTTCCGCATCCCTGTCTGGA AGTAGCTCGTCGTCCTCTTCATCTCGTTCCCGGTCACCACCAAAGAAACCTCCCAAGAGGACATCCAGCC CTCCTCGGAAAACGCGTAGGTTATCACCTTCAGCAAGTCCTCCACGGCGAAGACACCGGCCGTCATCTCC AGCAACTCCGCCACCCAAAACTCGCCATTCCCCAACTCCCCAGCAGTCAAACCGTACAAGAAAAAGTCGT GTTTCTGTGTCTCCAGGAAGAACCTCCGGTAAAGTGACAAAACATAAAGGTACTGAGAAAAGAGAGTCAC CTTCTCCAGCACCCAAGCCTAGAAAAGTGGAGCTGTCTGAGTCTGAAGAAGACAAAGGCAGCAAAATGGC TGCAGCTGATTCTGTGCAGCAGAGAAGACAATACCGACGGCAGAACCAGCAGTCTTCATCTGACTCTGGC TCCTCTTCCACCTCAGAAGATGAGCGGCCCAAGAGATCCCATGTAAAGAACGGTGAGGTAGGCAGGCGGC GGAGACATTCCCCTTCTCGGAGTGCCTCTCCATCACCTCGAAAGCGCCAGAAAGAGACTTCCCCTCGGAT GCAGATGGGAAAGCGATGGCAGTCACCAGTGACTAAAAGTAGTAGAAGGAGGAGAAGTCCCTCTCCCCCT CCTGCCAGAAGGCGAAGGTCTCCTTCTCCAGCCCCTCCGCCGCCACCTCCCCCTCCTCCTCCTCGGCGGC GCAGATCTCCCACCCCACCACCACGACGAAGGACCCCTTCTCCTCCCCCACGCCGCCGCTCACCGTCTCC AAGAAGATACTCTCCTCCCATTCAGAGGAGATACTCTCCTTCCCCCCCTCCAAAGAGGAGAACCGCCTCC CCCCCGCCCCCGCCCAAGCGAAGGGCATCACCATCTCCACCACCAAAGCGCCGGGTCTCCCACTCTCCAC CTCCTAAACAAAGAAGCCCCACAGTCACCAAGAGACGCTCGCCCTCCTTATCTTCAAAACATAGGAAAGG GTCTTCCCCAGGCCGATCCACCCGGGAGGCCCGCTCACCACAACCAAACAAACGGCATTCGCCCTCACCA CGGCCTCGGGCTCCTCAGACCTCAAGCCCTCCCCCTGTACGAAGAGGAGCTTCAGCGTCACCCCAAGGAA GGCAGTCCCCATCTCCAAGTACTAGGCCTATTAGGAGAGTCTCCAGGACCCCGGAGCCCAAAAAGATAAA AAAGGCTGCCTCACCAAGCCCTCAGTCCGTAAGAAGGGTTTCATCTTCCAGATCTGTCTCTGGATCTCCT GAGCCAGCAGCTAAAAAGCCGCCAGCACCTCCCTCTCCTGTGCAGTCTCAGTCACCCTCCACAAACTGGT CACCTGCAGTACCAGCCAAAAAGGCTAAGAGCCCAACACCAAGCCTGTCCCCTGCCCGGAATTCTGATCA AGAAGGAGGTGGGAAGAAAAAGAAGAAGAAGAAGGACAAGAAACACAAGAAGGATAAGAAACACAAGAAG CACAAAAAACACAAGAAGGAGAAGGCTGTGACCATAGCCACCCCAGCTACTGCAGCCCCTGCAGCTGTTT CTGCTGCCACCACCACATCAGCACAGGAAGAGCCTGCAGCAGCACCAGAGCCCAGGAAGGAGACTGAGAG TGAAGCTGAAGATGACAACCTTGATGACCTAGAGAGGCACCTGCGGGAGAAGGCCCTGCGGTCCATGCGG AAGGCTCAAGTGTCCCCACAGTCCTAA
Translation (918 aa):
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEF IFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEK LASLKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSP SPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRSRS KSRSRTRSRSPSHTRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSG SSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSR VSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSG SSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPP PARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTAS PPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP RPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSP EPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKDKKHKK HKKHKKEKAVTIATPATAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMR KAQVSPQS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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