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Report for CCDS37339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37339.1 Public Mus musculus 16 Fstl1 23 108 98 CCDS HistoryNCBI Gene:14314Re-query CCDS DB by CCDS ID:37339.1Re-query CCDS DB by GeneID:14314See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114763.2 ENSMUSP00000110411.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114763.2Link to Ensembl Protein Viewer:ENSMUSP00000110411.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114763Re-query CCDS DB by Protein ID:ENSMUSP00000110411
Original member Current member NCBI NM_008047.5 NP_032073.2 Accepted alive Link to Nucleotide Sequence:NM_008047.5Link to Protein Sequence:NP_032073.2Re-query CCDS DB by Nucleotide ID:NM_008047Re-query CCDS DB by Protein ID:NP_032073Link to BLAST:NP_032073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032073.2 306 Q62356 306 100% 0 0

Chromosomal Locations for CCDS 37339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 37777294 37777350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37815706 37815810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37818904 37819033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37821156 37821188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37822601 37822731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37826726 37826844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37828707 37828819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37829114 37829224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37831557 37831633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37833882 37833926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGTGGAAACGATGGCTGGCGCTCTCGCTGGTGACCATCGCCCTGGTCCACGGCGAGGAGGAACCTAGAA
GCAAATCCAAGATCTGCGCCAATGTGTTTTGTGGAGCTGGCAGGGAATGTGCCGTCACAGAGAAGGGGGA
GCCCACGTGCCTCTGCATTGAGCAATGCAAACCTCACAAGAGGCCTGTGTGTGGCAGTAATGGCAAGACC
TACCTCAACCACTGTGAACTTCATAGAGATGCCTGCCTCACTGGATCCAAGATCCAGGTTGATTATGATG
GGCACTGCAAAGAAAAGAAGTCTGCGAGTCCATCTGCCAGCCCAGTTGTCTGCTATCAAGCTAACCGCGA
TGAGCTCCGACGGCGCCTCATCCAGTGGCTGGAAGCTGAGATCATTCCAGATGGCTGGTTCTCTAAAGGC
AGTAACTACAGTGAGATCCTAGACAAGTACTTTAAGAGCTTTGATAATGGCGACTCTCACCTGGACTCCA
GTGAATTCCTGAAATTCGTGGAGCAGAATGAAACAGCCATCAACATCACCACTTATGCAGATCAGGAGAA
CAACAAACTGCTCAGAAGCCTCTGTGTTGACGCCCTCATTGAACTGTCTGATGAGAACGCTGACTGGAAA
CTCAGCTTCCAAGAGTTCCTCAAGTGCCTCAACCCATCCTTCAACCCTCCTGAGAAGAAGTGTGCCCTGG
AGGACGAAACCTATGCAGATGGAGCTGAGACTGAGGTGGACTGCAATCGCTGTGTCTGTTCCTGTGGCCA
CTGGGTCTGCACAGCAATGACCTGTGATGGAAAGAATCAGAAGGGGGTCCAGACCCACACAGAGGAGGAG
AAGACAGGATATGTCCAGGAACTCCAGAAGCACCAGGGCACAGCAGAAAAGACCAAGAAGGTGAACACCA
AAGAGATCTAA

Translation (306 aa):
MWKRWLALSLVTIALVHGEEEPRSKSKICANVFCGAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKT
YLNHCELHRDACLTGSKIQVDYDGHCKEKKSASPSASPVVCYQANRDELRRRLIQWLEAEIIPDGWFSKG
SNYSEILDKYFKSFDNGDSHLDSSEFLKFVEQNETAINITTYADQENNKLLRSLCVDALIELSDENADWK
LSFQEFLKCLNPSFNPPEKKCALEDETYADGAETEVDCNRCVCSCGHWVCTAMTCDGKNQKGVQTHTEEE
KTGYVQELQKHQGTAEKTKKVNTKEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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