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Report for CCDS50644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50644.1 Public Mus musculus 2 Phf21a 23 108 98 CCDS HistoryNCBI Gene:192285Re-query CCDS DB by CCDS ID:50644.1Re-query CCDS DB by GeneID:192285See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090586.11 ENSMUSP00000088074.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090586.11Link to Ensembl Protein Viewer:ENSMUSP00000088074.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090586Re-query CCDS DB by Protein ID:ENSMUSP00000088074
Original member Current member EBI ENSMUST00000111293.8 ENSMUSP00000106924.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111293.8Link to Ensembl Protein Viewer:ENSMUSP00000106924.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111293Re-query CCDS DB by Protein ID:ENSMUSP00000106924
Original member Current member NCBI NM_001109690.2 NP_001103160.1 Accepted alive Link to Nucleotide Sequence:NM_001109690.2Link to Protein Sequence:NP_001103160.1Re-query CCDS DB by Nucleotide ID:NM_001109690Re-query CCDS DB by Protein ID:NP_001103160Link to BLAST:NP_001103160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103160.1 688 Q6ZPK0-10 688 99.8547% 0 1

Chromosomal Locations for CCDS 50644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 92221562 92221615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92228449 92228481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92230659 92230724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92320229 92320459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92326913 92327164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92328312 92328401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92330515 92330808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92344544 92344642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92347996 92348047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92348878 92348957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92349388 92349448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92351701 92351864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92356864 92357019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92358694 92358769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92359106 92359209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92360169 92360423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGAGTTGCAGACTCTACAGGAGGCTCTTAAAGTGGAAATTCAGGTTCACCAGAAACTGGTTGCCCAAA
TGAAGCAGGATCCACAGAATGCTGACTTAAAGAAACAGCTTCATGAACTCCAAGCCAAAATCACAGCTTT
GAGTGAGAAACAGAAAAGAGTAGTTGAGCAGCTGCGCAAGAACCTGATAGTCAAACAAGAGCAGCCGGAC
AAGTTCCAGATACAGCCATTGTCACAGTCTGAAAACAAACTACAAACAGCACAGCAGCAGCCACTACAGC
CACTGCAGCAGCAGCAACCGCAGCAACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGCCCAGCAGTC
AGCAGCAGCACCGCCTAGTCTAACTGCATCACAGAAGACTGTAACTACAGCTTCTATGATTACCACAAAG
ACACTACCTCTCGTCTTGAAAGCAGCAACTGCGACCATGCCTGCCTCTGTTGTGGGCCAGAGACCTACCA
TTGCTATGGTGACCGCCATCAACAGCCAGAAGGCTGTGCTCAGCACTGATGTGCAGAACACACCAGTCAA
CCTCCAGACGTCTAGTAAGGTCACTGGGCCTGGGGCAGAGGCTGTCCAAATTGTGGCAAAAAACACAGTC
ACTCTGCAGGTTCAAGCAACACCTCCTCAGCCCATCAAAGTACCACAGTTTATCCCTCCTCCTAGACTCA
CTCCACGCCCAAACTTCCTTCCACAGGTTCGACCCAAGCCTGTGGCCCAGAATAACATTCCTATCGCTCC
AGCGCCTCCTCCCATGCTTGCAGCTCCTCAGCTTATCCAGAGGCCTGTCATGCTGACCAAGTTTACACCC
ACAACCCTCCCCACATCCCAGAATTCCATCCACCCTGTCCGTGTTGTCAATGGACAGACTGCAACCATAG
CCAAAACGTTCCCCATGGCCCAGCTCACCAGCATTGTCATAGCTACTCCAGGGACCAGACTCCCTGGACC
TCAGACTGTACAGCTTAGCAAACCAAGCCTGGAGAAACAGACAGTTAAATCCCACCCAGAAGCAGAGGAA
AAACAAGCAGAGAGCCGTACCGTTACCCCACCTGCTGCACCAAAACCAAAACGAGAAGAGAACCCTCAGA
AACTTGCCTTCATGGTGTCTCTAGGGTTGGTAACACATGACCATCTAGAAGAAATCCAAAGCAAGAGGCA
GGAAAGAAAGAGAAGAACAACAGCAAACCCGGTGTACAGTGGGGCTGTCTTTGAGCCAGAGCGTAAGAAG
AGTGCAGTCACTTACCTTAACAGCACAATGCATCCTGGGACGCGGAAGAGAGGTCGTCCTCCAAAATACA
ATGCGGTGCTGGGGTTTGGAGCCCTTACCCCAACATCCCCCCCATCCAGTCATCCCGACTCCCCTGAAAA
TGAAAAGACAGAGACCACATTCACTTTCCCTGCACCTGTTCAGCCTGTGTCTTTGCCCAGCCCCACCTCC
ACAGACGGTGATATCCATGAGGATTTTTGCAGTGTTTGCAGAAAAAGTGGCCAGTTGCTGATGTGTGACA
CGTGTTCCCGTGTGTATCATCTGGACTGCTTAGAGCCGCCCCTGAAAACAATTCCCAAGGGCATGTGGAT
CTGTCCCAGATGTCAGGACCAGATGCTAAAGAAGGAAGAAGCAATTCCTTGGCCTGGAACCTTAGCCATT
GTTCATTCCTACATCGCCTACAAAGCAGCAAAAGAAGAGGAGAAACAGAAGCTACTTAAGTGGAGTTCAG
ATTTAAAACAGGAGCGGGAACAACTGGAGCAGAAGGTCAAAGAGCTCAGCAGTTCTATAAGTAAATGTAT
GGAGATGAAGAGCAGCATCCTGGCGCGGCAGAAGGAGATGCGCAGCTCCCTGGACAAGGTGAAGCGGCTC
ATCCGCCTTGTGCATGGCGTCGACCTCTGCAGACCTGTGGACTCAGAGGCCACGGCGGGGGCCCTCTCCA
ATGGCCCAGACTGCACTCCCCCTGCCAACGCCGCCTCCACACCCGCCCCTTCCCCCTCCTCGCAGAGCTG
CACAGCGAACTGTAACCAGGGGGAAGAGACTAAATAA

Translation (688 aa):
MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPD
KFQIQPLSQSENKLQTAQQQPLQPLQQQQPQQPQQQQQQQQQHAQQSAAAPPSLTASQKTVTTASMITTK
TLPLVLKAATATMPASVVGQRPTIAMVTAINSQKAVLSTDVQNTPVNLQTSSKVTGPGAEAVQIVAKNTV
TLQVQATPPQPIKVPQFIPPPRLTPRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTP
TTLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTSIVIATPGTRLPGPQTVQLSKPSLEKQTVKSHPEAEE
KQAESRTVTPPAAPKPKREENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSGAVFEPERKK
SAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPPSSHPDSPENEKTETTFTFPAPVQPVSLPSPTS
TDGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAI
VHSYIAYKAAKEEEKQKLLKWSSDLKQEREQLEQKVKELSSSISKCMEMKSSILARQKEMRSSLDKVKRL
IRLVHGVDLCRPVDSEATAGALSNGPDCTPPANAASTPAPSPSSQSCTANCNQGEETK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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