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Report for CCDS27148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27148.1 Public Mus musculus 14 Atp12a 23 108 98 CCDS HistoryNCBI Gene:192113Re-query CCDS DB by CCDS ID:27148.1Re-query CCDS DB by GeneID:192113See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007340.3 ENSMUSP00000007340.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007340.3Link to Ensembl Protein Viewer:ENSMUSP00000007340.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000007340Re-query CCDS DB by Protein ID:ENSMUSP00000007340
Original member Current member NCBI NM_138652.2 NP_619593.2 Accepted alive Link to Nucleotide Sequence:NM_138652.2Link to Protein Sequence:NP_619593.2Re-query CCDS DB by Nucleotide ID:NM_138652Re-query CCDS DB by Protein ID:NP_619593Link to BLAST:NP_619593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619593.2 1035 Q9Z1W8 1035 100% 0 0

Chromosomal Locations for CCDS 27148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56365281 56365289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56365949 56366098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56368383 56368442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56370776 56370976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56371739 56371852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56372579 56372713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56372843 56372960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56373188 56373456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56374427 56374625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56374760 56374869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56376138 56376272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56378283 56378475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56379948 56380123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56380763 56380899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56382497 56382647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56384067 56384235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56384326 56384480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56385793 56385916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56386112 56386257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56386848 56386981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56387150 56387251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56387640 56387731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56387893 56387921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGCGCCGGAAAACAGAAATCTATTCTGTAGAGCTCAATGGAACTAAAGACGTCGAGCTGGCAGACCAGA
AAGATGACAAAAAGTTCAAGGGCGGGAAGAACAAAGACTCAGAACCCAACAAGAGTCAGGAGGAGGAGCT
GAAGAAAGAACTTGATCTGGATGACCACAGACTCAGTAATACAGATTTGGAACAGAAATATGGTACAAAC
ATCATCCAGGGTCTCTCCAGTATCAGAGCTGCAGAGCTCCTGGCTCGGGATGGGCCCAACGCCCTCACCC
CTCCCAAGCAAACTCCAGAGATCATCAAGTTCCTCAAACAGATGGTGGGGGGCTTTTCCATCCTTCTGTG
GATAGGTGCAGCCTTGTGCTGGATCGCATATGTGATCCAGTATGTCAGCAGTACTGCATCCCTGGACAAT
GTCTATTTGGGCGCCATACTTGTCCTGGTCGTTATTTTAACGGGGATTTTTGCTTATTACCAAGAAGCCA
AAAGTACCAACATTATGGCAAGCTTTAGTAAGATGATCCCCCAGCAAGCTCTTGTCATCCGAGATGCAGA
AAAGAAGATCATTCCAGCAGAGCAGCTGGTGGTGGGGGACGTTGTGGAGATTAAAGGAGGGGACCAGATC
CCTGCAGACATCAGACTGGTGTTTTCCCAAGGGTGCAAAGTAGATAACTCCTCTCTCACTGGGGAGTCTG
AGCCCCAGGCTCGGTCAACTGAGTTTACCCATGAAAACCCCTTGGAAACTAAGAACATAGGCTTCTATTC
TACAACGTGCCTGGAAGGTACGGCAACTGGCATTGTCATCAACACGGGTGACCGCACCATCATCGGGCGC
ATAGCCTCCTTGGCTTCAGGCGTTGGGAGTGAGAAGACACCCATAGCCATTGAGATTGAGCATTTTGTCC
ATATTGTGGCAGCAGTGGCTGTGTCCGTTGGCGTCATTTTCTTCATCACCGCCGTGTGCATGAAGTACTA
CGTCCTGGATGCCATCATCTTCCTCATTAGCATCATTGTGGCCAATGTGCCAGAGGGCCTCCTGGCTACT
GTCACTGTTACCCTGTCACTGACGGCAAAGCGGATGGCTAAGAAGAACTGCTTGGTAAAGAACCTGGAGG
CCGTGGAGACGCTTGGCTCCACCTCCATCATCTGCTCAGATAAGACAGGGACCCTCACCCAGAACAGGAT
GACTGTGGCCCACTTGTGGTTTGACAACCAGATCTTTGTGGCTGATACAAGTGAAAACCAGACAAAACAA
GCCTTTGACCAAAGCTCTGGAACCTGGGCTTCCTTGTCCAAGATAATAACACTGTGTAACCGAGCAGAGT
TCAGGCCAGGCCAGGAGAGTGTCCCCATCATGAAGAGAGTTGTGGTTGGAGATGCCTCAGAAACTGCTCT
GCTAAAGTTCTCAGAGGTTATTTTGGGTGATGTGATGGACATTAGGAAAAGAAACCACAAAGTAGCTGAG
ATTCCTTTTAATTCTACCAACAAATTTCAGCTCTCCATACATGAGACCGAGGACCCGAATGACAAGCGCT
TCCTCATGGTGATGAAAGGGGCCCCTGAGAGGATCTTAGAGAAGTGCAGCACCATCATGATCAACGGCCA
GGAGCAGCCACTGGACAAGAGCTCTGCCGATGCCTTCCACACGGCCTACATGGAGCTGGGTGGTCTGGGA
GAGCGTGTGTTGGGTTTCTGTCACCTCTACTTGCCAGCAGATAAGTTTCCCCAAAGCTACACATTTGATG
TAGACTCCATAAACTTTCCCACTTCCAATCTCTGCTTTGTGGGGCTTCTGTCCATGATTGACCCTCCTCG
GTCTACCGTGCCAGATGCGGTCTCCAAATGTCGGAGTGCGGGGATCAAGGTTATCATGGTCACAGGTGAT
CACCCTATCACAGCCAAAGCTATTGCCAAGAGTGTAGGAATCATATCAGCCAACAATGAGACGGTGGAAG
ACATCGCAAAACGCCGCAACATTGCTGTGGAGCAAGTCAACAAAAGAGAAGCGAAAGCCGCTGTGGTGAC
TGGCATGGAACTGAAGGACATGACCCCAGAACAACTGGATGAGCTTCTAATCAACTACCAAGAAATTGTG
TTTGCCCGGACATCACCCCAGCAGAAGTTGATCATTGTAGAAGGCTGTCAGAGGCAGGATGCAGTTGTTG
CTGTGACGGGTGATGGAGTAAACGACTCTCCAGCATTAAAGAAGGCAGACATCGGGATTGCTATGGGGAT
AGCAGGTTCTGATGCTGCTAAGAATGCAGCTGACATGGTCTTGCTCGATGACAACTTTGCATCTATAGTC
ACAGGGGTGGAGGAAGGTCGCCTGATCTTCGACAACCTGAAGAAGACCATTGCTTACACCCTGACAAAGA
ACATCGCTGAGCTCTGCCCTTTTTTGATCTACATTGTTGCTGGGCTCCCCCTGCCTATTGGCACCATCAC
TATCCTATTCATCGACCTGGGCACAGACATTATCCCCTCCATTGCCTTGGCCTATGAGAAAGCGGAAAGT
GACATTATGAATAGGAAACCTCGCCACAAGAAGAAAGACAGACTGGTGAACAAGCAGCTGGCCATCTACT
CTTACCTTCACATTGGTCTCATGCAAGCCCTGGGAGGTTTCCTCGTCTATTTCACTGTCTATGCACAGCA
GGGCTTTTGGCCCACCTCTCTCATCAACCTGAGGGTATCATGGGAAACAGATGACATAAATGACTTGGAA
GATAGCTACGGGCAGGAATGGACGAGGTATCAGAGAAAATACCTGGAATGGACAGGCTCAACGGCTTTCT
TTGTTGCCATCATGGTCCAACAAATTGCAGATCTGATCATCAGGAAAACCCGGAGGAATTCCATCTTCCA
GCAGGGGCTCTTCAGAAACAAAGTCATCTGGGTGGGGATCATCTCGCAGATCATCGTTGCGTTGGTCCTC
TCCTACGGTCTCGGGAGTGTCACAGCTCTGAGCTTTACCATGCTCAGGGCTCAGTACTGGTTTGTGGCTG
TCCCGCATGCCATTTTGATTTGGGTGTATGACGAGATGCGGAAGTTGTTCATCAGGCTCTACCCTGGAAG
CTGGTGGGACAAGAACATGTATTATTAA

Translation (1035 aa):
MRRKTEIYSVELNGTKDVELADQKDDKKFKGGKNKDSEPNKSQEEELKKELDLDDHRLSNTDLEQKYGTN
IIQGLSSIRAAELLARDGPNALTPPKQTPEIIKFLKQMVGGFSILLWIGAALCWIAYVIQYVSSTASLDN
VYLGAILVLVVILTGIFAYYQEAKSTNIMASFSKMIPQQALVIRDAEKKIIPAEQLVVGDVVEIKGGDQI
PADIRLVFSQGCKVDNSSLTGESEPQARSTEFTHENPLETKNIGFYSTTCLEGTATGIVINTGDRTIIGR
IASLASGVGSEKTPIAIEIEHFVHIVAAVAVSVGVIFFITAVCMKYYVLDAIIFLISIIVANVPEGLLAT
VTVTLSLTAKRMAKKNCLVKNLEAVETLGSTSIICSDKTGTLTQNRMTVAHLWFDNQIFVADTSENQTKQ
AFDQSSGTWASLSKIITLCNRAEFRPGQESVPIMKRVVVGDASETALLKFSEVILGDVMDIRKRNHKVAE
IPFNSTNKFQLSIHETEDPNDKRFLMVMKGAPERILEKCSTIMINGQEQPLDKSSADAFHTAYMELGGLG
ERVLGFCHLYLPADKFPQSYTFDVDSINFPTSNLCFVGLLSMIDPPRSTVPDAVSKCRSAGIKVIMVTGD
HPITAKAIAKSVGIISANNETVEDIAKRRNIAVEQVNKREAKAAVVTGMELKDMTPEQLDELLINYQEIV
FARTSPQQKLIIVEGCQRQDAVVAVTGDGVNDSPALKKADIGIAMGIAGSDAAKNAADMVLLDDNFASIV
TGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIVAGLPLPIGTITILFIDLGTDIIPSIALAYEKAES
DIMNRKPRHKKKDRLVNKQLAIYSYLHIGLMQALGGFLVYFTVYAQQGFWPTSLINLRVSWETDDINDLE
DSYGQEWTRYQRKYLEWTGSTAFFVAIMVQQIADLIIRKTRRNSIFQQGLFRNKVIWVGIISQIIVALVL
SYGLGSVTALSFTMLRAQYWFVAVPHAILIWVYDEMRKLFIRLYPGSWWDKNMYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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