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Report for CCDS79291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79291.1 Public Mus musculus 14 Slc18a3 23 108 98 CCDS HistoryNCBI Gene:20508Re-query CCDS DB by CCDS ID:79291.1Re-query CCDS DB by GeneID:20508See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191501.1 ENSMUSP00000139829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191501.1Link to Ensembl Protein Viewer:ENSMUSP00000139829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191501Re-query CCDS DB by Protein ID:ENSMUSP00000139829
Original member Current member NCBI NM_021712.3 NP_068358.2 Accepted alive Link to Nucleotide Sequence:NM_021712.3Link to Protein Sequence:NP_068358.2Re-query CCDS DB by Nucleotide ID:NM_021712Re-query CCDS DB by Protein ID:NP_068358Link to BLAST:NP_068358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068358.2 530 O35304 530 99.6226% 0 2

Chromosomal Locations for CCDS 79291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32462832 32464424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAACCCACCGCGCCAACCGGTCAGGCCCGGGCGGCGGCCACCAAGCTGTCGGAAGCAGTGGGAGCCG
CGCTACAAGAGCCCCAGAGGCAGCGGCGCCTGGTGCTGGTCATCGTGTGCGTTGCACTGTTACTGGACAA
CATGTTGTACATGGTCATCGTGCCCATTGTTCCCGACTATATCGCTCACATGCGCGGGGGCAGCGAGAGC
CCTACCCTGATCTCTGAGGTGTGGGAACCCACCCTGCCGCCGCCCACTCTGGCTAATGCCAGCGCCTACT
TGGCCAACACCTCGGCGTCCCCGACGGCTGCCGGGTCGGCTCGGTCAATCCTGCGGCCTCGCTACCCCAC
AGAAAGTGAAGATGTGAAGATAGGCGTGCTATTTGCCTCCAAGGCCATCCTGCAGCTTCTGGTGAACCCC
TTAAGCGGGCCTTTCATTGATCGCATGAGCTACGACGTGCCGCTGCTTATTGGCCTGGGCGTCATGTTCG
CCTCCACAGTCATGTTTGCCTTTGCAGAAGACTATGCCACGCTCTTCGCTGCGCGCAGTCTACAAGGCCT
GGGCTCAGCCTTCGCGGACACGTCTGGCATTGCCATGATCGCCGACAAGTATCCCGAGGAGCCTGAGCGC
AGTCGTGCTCTGGGCGTGGCGCTAGCCTTCATCAGCTTTGGAAGCCTAGTGGCGCCACCGTTTGGGGGCA
TCCTCTACGAGTTCGCGGGCAAGCGTGTACCCTTTCTAGTGCTCGCCGCCGTGTCGCTCTTCGACGCACT
CCTACTCCTGGCGGTGGCTAAGCCTTTCTCAGCTGCGGCTCGGGCGCGGGCCAACCTGCCCGTGGGCACA
CCTATCCATCGCCTCATGCTAGACCCTTACATCGCTGTTGTAGCCGGAGCGCTCACAACTTGTAACATTC
CCCTTGCGTTTCTCGAGCCCACCATAGCCACGTGGATGAAGCACACAATGGCGGCATCCGAGTGGGAGAT
GGGCATGGTTTGGCTGCCGGCTTTCGTGCCACACGTGTTAGGCGTCTATCTCACCGTGCGTCTAGCGGCG
CGCTATCCACACCTGCAGTGGCTGTATGGCGCTCTCGGGCTAGCGGTAATCGGAGTGAGCTCTTGCGTCG
TACCTGCCTGCCGATCCTTCGCGCCCTTAGTGGTCTCGCTCTGCGGCCTCTGCTTCGGCATCGCGTTGGT
GGACACGGCGCTCCTACCCACGCTCGCCTTTCTGGTGGACGTGCGCCACGTATCAGTCTATGGCAGTGTC
TATGCCATAGCTGACATCTCCTATTCTGTGGCCTACGCTCTCGGGCCCATAGTAGCAGGCCATATCGTTC
ACTCACTTGGCTTTGAGCAGCTCAGCCTTGGCATGGGCCTGGCCAACCTGCTCTACGCACCGGTCCTATT
GCTCTTGCGTAATGTGGGCCTCCTTACACGCTCGCGTTCCGAGCGCGATGTGCTGCTTGATGAACCGCCG
CAGGGTCTGTACGACGCGATGCGCCTGCGTGAGGTGCAGGGCAAGGACGGCGGTGAACCTTGTAGCCCGC
CTGGCCCTTTTGATGGCTGTGAGGACGACTACAACTACTACTCCCGCAGCTAG

Translation (530 aa):
MEPTAPTGQARAAATKLSEAVGAALQEPQRQRRLVLVIVCVALLLDNMLYMVIVPIVPDYIAHMRGGSES
PTLISEVWEPTLPPPTLANASAYLANTSASPTAAGSARSILRPRYPTESEDVKIGVLFASKAILQLLVNP
LSGPFIDRMSYDVPLLIGLGVMFASTVMFAFAEDYATLFAARSLQGLGSAFADTSGIAMIADKYPEEPER
SRALGVALAFISFGSLVAPPFGGILYEFAGKRVPFLVLAAVSLFDALLLLAVAKPFSAAARARANLPVGT
PIHRLMLDPYIAVVAGALTTCNIPLAFLEPTIATWMKHTMAASEWEMGMVWLPAFVPHVLGVYLTVRLAA
RYPHLQWLYGALGLAVIGVSSCVVPACRSFAPLVVSLCGLCFGIALVDTALLPTLAFLVDVRHVSVYGSV
YAIADISYSVAYALGPIVAGHIVHSLGFEQLSLGMGLANLLYAPVLLLLRNVGLLTRSRSERDVLLDEPP
QGLYDAMRLREVQGKDGGEPCSPPGPFDGCEDDYNYYSRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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