NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52788.1 Public Mus musculus 9 Htr3a 23 108 98 CCDS HistoryNCBI Gene:15561Re-query CCDS DB by CCDS ID:52788.1Re-query CCDS DB by GeneID:15561See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003826.7 ENSMUSP00000003826.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003826.7Link to Ensembl Protein Viewer:ENSMUSP00000003826.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003826Re-query CCDS DB by Protein ID:ENSMUSP00000003826
Original member Current member NCBI NM_013561.2 NP_038589.2 Accepted alive Link to Nucleotide Sequence:NM_013561.2Link to Protein Sequence:NP_038589.2Re-query CCDS DB by Nucleotide ID:NM_013561Re-query CCDS DB by Protein ID:NP_038589Link to BLAST:NP_038589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038589.2 489 P23979-1 489 100% 0 0

Chromosomal Locations for CCDS 52788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48899692 48900008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48900561 48900782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48900874 48901084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48901418 48901578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48904577 48904746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48906283 48906392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48907354 48907398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48908595 48908761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48910899 48910965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGCGGCTCTGCATCCCGCAGGTGCTGTTGGCCTTGTTCCTTTCCATGCTGACAGCCCCGGGAGAAGGCA
GCCGGAGGAGGGCCACCCAGGCCCGAGATACCACCCAGCCTGCTCTACTAAGGCTGTCAGACCACCTCCT
GGCTAACTACAAGAAGGGGGTGCGGCCTGTGCGGGACTGGAGGAAGCCTACTACTGTCTCCATTGATGTC
ATCATGTATGCCATCCTCAACGTGGATGAGAAGAACCAGGTTCTGACCACCTACATATGGTACCGGCAGT
ACTGGACTGATGAGTTTCTGCAGTGGACTCCTGAGGACTTCGACAATGTCACCAAATTGTCCATCCCCAC
AGACAGCATCTGGGTCCCTGACATCCTCATCAATGAGTTTGTGGACGTGGGGAAGTCTCCGAACATTCCT
TATGTGTACGTGCATCATCGAGGTGAAGTTCAGAACTACAAGCCCTTGCAATTGGTGACCGCCTGTAGCC
TTGACATCTACAACTTCCCCTTTGATGTGCAGAACTGCTCTCTGACTTTCACCAGCTGGCTGCACACCAT
CCAGGACATCAACATTACCCTGTGGCGATCACCGGAAGAAGTGAGGTCTGACAAGAGCATCTTCATAAAT
CAGGGCGAGTGGGAGCTGCTGGAGGTGTTCCCCCAGTTCAAGGAGTTCAGCATAGATATCAGTAACAGCT
ATGCAGAAATGAAGTTCTACGTGATCATCCGCCGGAGGCCTTTATTCTACGCAGTCAGCCTCTTGCTGCC
CAGTATCTTCCTCATGGTCGTGGACATTGTGGGCTTTTGCCTGCCCCCGGACAGCGGTGAGAGAGTCTCT
TTCAAGATCACACTCCTTCTGGGATACTCAGTCTTCCTCATCATCGTGTCAGACACACTGCCAGCAACGG
CCATCGGTACCCCCCTCATTGGTGTCTATTTTGTGGTGTGCATGGCTCTGCTAGTGATAAGCCTCGCTGA
GACCATCTTCATTGTGCGGCTGGTGCATAAGCAGGACCTACAGCGGCCAGTACCTGACTGGCTGAGGCAC
CTGGTCCTAGACAGAATAGCCTGGATACTCTGCCTAGGGGAGCAGCCTATGGCCCATAGACCCCCAGCCA
CCTTCCAAGCCAACAAGACTGATGACTGCTCAGGTTCTGATCTTCTTCCAGCCATGGGAAACCACTGCAG
CCATGTTGGAGGACCTCAGGACTTGGAGAAGACCCCAAGGGGCAGAGGTAGCCCTCTTCCACCACCAAGG
GAGGCCTCGCTGGCTGTGCGCGGTCTCTTGCAAGAGCTATCCTCCATCCGCCACTTCCTGGAGAAGCGGG
ATGAGATGCGGGAGGTGGCAAGGGACTGGCTGCGGGTGGGATACGTGCTGGACAGGCTGCTGTTCCGCAT
CTACCTGCTGGCTGTGCTCGCTTACAGCATCACCCTGGTCACTCTCTGGTCCATTTGGCATTATTCTTGA

Translation (489 aa):
MRLCIPQVLLALFLSMLTAPGEGSRRRATQARDTTQPALLRLSDHLLANYKKGVRPVRDWRKPTTVSIDV
IMYAILNVDEKNQVLTTYIWYRQYWTDEFLQWTPEDFDNVTKLSIPTDSIWVPDILINEFVDVGKSPNIP
YVYVHHRGEVQNYKPLQLVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDINITLWRSPEEVRSDKSIFIN
QGEWELLEVFPQFKEFSIDISNSYAEMKFYVIIRRRPLFYAVSLLLPSIFLMVVDIVGFCLPPDSGERVS
FKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFVVCMALLVISLAETIFIVRLVHKQDLQRPVPDWLRH
LVLDRIAWILCLGEQPMAHRPPATFQANKTDDCSGSDLLPAMGNHCSHVGGPQDLEKTPRGRGSPLPPPR
EASLAVRGLLQELSSIRHFLEKRDEMREVARDWLRVGYVLDRLLFRIYLLAVLAYSITLVTLWSIWHYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH