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Report for CCDS51335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51335.1 Public Mus musculus 4 Sh2d5 23 108 98 CCDS HistoryNCBI Gene:230863Re-query CCDS DB by CCDS ID:51335.1Re-query CCDS DB by GeneID:230863See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105823.1 ENSMUSP00000101449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105823.1Link to Ensembl Protein Viewer:ENSMUSP00000101449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105823Re-query CCDS DB by Protein ID:ENSMUSP00000101449
Original member Current member EBI ENSMUST00000105824.7 ENSMUSP00000101450.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105824.7Link to Ensembl Protein Viewer:ENSMUSP00000101450.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105824Re-query CCDS DB by Protein ID:ENSMUSP00000101450
Original member Current member NCBI NM_001099631.1 NP_001093101.1 Accepted alive Link to Nucleotide Sequence:NM_001099631.1Link to Protein Sequence:NP_001093101.1Re-query CCDS DB by Nucleotide ID:NM_001099631Re-query CCDS DB by Protein ID:NP_001093101Link to BLAST:NP_001093101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093101.1 429 Q8JZW5 429 100% 0 0

Chromosomal Locations for CCDS 51335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138253872 138253958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138254273 138254353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138254698 138254772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138255552 138255698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138256713 138256964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138257115 138257289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138257605 138257713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138258169 138258328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138259054 138259257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGCAGAGGGCTGGGGCCGGGGCCCGAAGGGCTTCCGACTGTGGGCCTGCACCTTACCGGCCCAGGTGCA
TTGCCAAGCTTGCCCAGTATGTGGGATCCTTTCCTGTGGATGACTTGGACACTCAGGAGAGCGTGGGCCT
CGTACAGCAGCAGCTATGGGCCCTGCAGGACTGTTCCCGACGCCGGGCTGTCATTCTGAAATTCAGTCTT
CAGGGTCTCAAGATCTACAGTGGGGAGGGCGAGGTGCTCCTAATGGCCCATGCGCTGAAGCGCATCCTCT
ATGCCACCTGGTACCCAGCTGCCTGCCAGTTTGCTTTTATTGCCCGGAACCCACGCAGCCCATCCAGCAA
GCTCTTTTGTCATCTCTTTGTGGGGAGCCAGCCTGGAGAGGTCCATATCCTGTATCTGCTGCTCTGCCGT
TCCTTCCAGCTTGCATACCTCTTGCAGCACCCTGAGGAGAGGGCACAGTCTGAGCCTTGCCTGGCGCCTG
TAGGGGACCTGTCCCTGAAGCCACTCTGCAGCCCTGGGGTACCCCCTGCATTAGTGCGAGAGCCCTTCAG
CCGGGATCAGCTGTCACAGAATGTTCATGCCCTGGTCTCCTTCCGGCGGCTTCCTGCAGAAGGGCTCCTG
GGCAGTAATGGGAAGGAGCTGCCAGAGTCAGAGGGCCGTGGGGGCACCCGTCATATTCGCCTGGGGAACC
CCTACTGCTCACCCACACTGGTGCGCAAGAAGGCCATTCGCAGCAAGGTGATCCGCTCCGGGGCCTACCG
AGGCTGCACCTATGAGACCCAGCTTCAGCTGTCAGCCCGGGAAGCCTTTCCTGCTGCATGGGAGGCGTGG
CCCCGTGGCCCTGGTGGCCCCTCGTGCCTTGTGGAGAATGAGGGAAGCCTGACAGAGAACATCTGGGCCT
TTGCTGGCCTTTCCAGGTCCTGTGCTCTTTCCCTGCTGCGGAGAGATGTGCATGGAGCCTTCCTGCTGTG
GCCAGAGCCAGGTACCAGCGACCAGTGGAGCCTGTCCGTACGGACCCAGTGTGGCGTGGTGCCTCACCAG
GTCTTCAGGAACCACCTAGGCCGGTTCTGCCTAGAGCACCTGCCAGCAGAGTTCCCCAGCCTGGAGGCCC
TGGTGGAGAGCCACGCCGGGGTGGAACGAAGTCTCTTCTGCCCACTCAGCATGGGCCGTCTCAACCCTAC
CTACGAAGAGCAGGACTGTGGGACTGAGGGAAGGTTCCCACGGACTCTGCGGCCCCTCAGCCACGCCAAG
TCTGAGGCGGAATTGCAAGGCCTGGGCTAG

Translation (429 aa):
MQRAGAGARRASDCGPAPYRPRCIAKLAQYVGSFPVDDLDTQESVGLVQQQLWALQDCSRRRAVILKFSL
QGLKIYSGEGEVLLMAHALKRILYATWYPAACQFAFIARNPRSPSSKLFCHLFVGSQPGEVHILYLLLCR
SFQLAYLLQHPEERAQSEPCLAPVGDLSLKPLCSPGVPPALVREPFSRDQLSQNVHALVSFRRLPAEGLL
GSNGKELPESEGRGGTRHIRLGNPYCSPTLVRKKAIRSKVIRSGAYRGCTYETQLQLSAREAFPAAWEAW
PRGPGGPSCLVENEGSLTENIWAFAGLSRSCALSLLRRDVHGAFLLWPEPGTSDQWSLSVRTQCGVVPHQ
VFRNHLGRFCLEHLPAEFPSLEALVESHAGVERSLFCPLSMGRLNPTYEEQDCGTEGRFPRTLRPLSHAK
SEAELQGLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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