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Report for CCDS1988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1988.1 Public Homo sapiens 2 MRPL35 24 110 108 CCDS HistoryNCBI Gene:51318Re-query CCDS DB by CCDS ID:1988.1Re-query CCDS DB by GeneID:51318See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337109.9 ENSP00000338389.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337109.9Link to Ensembl Protein Viewer:ENSP00000338389.4Re-query CCDS DB by Nucleotide ID:ENST00000337109Re-query CCDS DB by Protein ID:ENSP00000338389
Original member Current member NCBI NM_016622.4 NP_057706.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016622.4Link to Protein Sequence:NP_057706.2Re-query CCDS DB by Nucleotide ID:NM_016622Re-query CCDS DB by Protein ID:NP_057706Link to BLAST:NP_057706.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057706.2 188 Q9NZE8-1 188 100% 0 0

Chromosomal Locations for CCDS 1988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86199491 86199533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86206106 86206295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86207183 86207327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86210480 86210668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGCTGCCTCTGCCTTTGCTGGTGCAGTGAGAGCAGCTTCAGGAATCCTACGGCCCCTGAATATTTTGG
CATCTTCAACCTACCGCAACTGTGTCAAGAATGCCTCTCTTATTTCTGCATTGTCCACTGGACGTTTTAG
TCATATTCAGACACCAGTTGTTTCCTCCACTCCCAGACTTACCACATCTGAGAGAAACCTGACATGTGGG
CATACCTCAGTGATCCTTAATAGAATGGCCCCCGTGCTTCCAAGTGTCCTGAAGCTGCCAGTCAGATCTC
TAACATACTTCAGTGCAAGAAAAGGCAAGAGAAAGACCGTGAAAGCTGTCATCGATAGGTTTCTTCGACT
TCATTGTGGCCTTTGGGTGAGGAGAAAGGCTGGCTATAAGAAAAAATTATGGAAAAAGACACCTGCAAGG
AAGAAGCGATTGAGGGAATTTGTATTCTGCAATAAAACCCAGAGTAAACTCTTAGATAAAATGACGACGT
CCTTCTGGAAGAGGCGAAACTGGTACGTTGATGATCCTTATCAGAAGTATCATGATCGAACAAACCTGAA
AGTATAG

Translation (188 aa):
MAASAFAGAVRAASGILRPLNILASSTYRNCVKNASLISALSTGRFSHIQTPVVSSTPRLTTSERNLTCG
HTSVILNRMAPVLPSVLKLPVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPAR
KKRLREFVFCNKTQSKLLDKMTTSFWKRRNWYVDDPYQKYHDRTNLKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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