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Report for CCDS12897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12897.1 Public Homo sapiens 19 LAIR2 24 110 108 CCDS HistoryNCBI Gene:3904Re-query CCDS DB by CCDS ID:12897.1Re-query CCDS DB by GeneID:3904See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301202.7 ENSP00000301202.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301202.7Link to Ensembl Protein Viewer:ENSP00000301202.2Re-query CCDS DB by Nucleotide ID:ENST00000301202Re-query CCDS DB by Protein ID:ENSP00000301202
Original member Current member NCBI NM_002288.6 NP_002279.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002288.6Link to Protein Sequence:NP_002279.2Re-query CCDS DB by Nucleotide ID:NM_002288Re-query CCDS DB by Protein ID:NP_002279Link to BLAST:NP_002279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002279.2 152 Q6ISS4-1 152 100% 0 0

Chromosomal Locations for CCDS 12897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54502919 54502952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54503700 54503735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54507891 54508184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54509035 54509085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54510526 54510569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGTCTCCACACCTCACTGCTCTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGG
GGGCCCTTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGTGATCTCCCCGGGGAGCCATGTGACTTT
CATGTGCCGGGGCCCGGTTGGGGTTCAAACATTCCGCCTGGAGAGGGAGGATAGAGCCAAGTACAAAGAT
AGTTATAATGTGTTTCGACTTGGTCCATCTGAGTCAGAGGCCAGATTCCACATTGACTCAGTAAGTGAAG
GAAATGCCGGGCTTTATCGCTGCCTCTATTATAAGCCCCCTGGATGGTCTGAGCACAGTGACTTCCTGGA
GCTGCTGGTGAAAGAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCGGCTCCTCAGCTGGGACT
GTGCCAGGCACTGAAGCCTCCGGATTTGATGCACCATGA

Translation (152 aa):
MSPHLTALLGLVLCLAQTIHTQEGALPRPSISAEPGTVISPGSHVTFMCRGPVGVQTFRLEREDRAKYKD
SYNVFRLGPSESEARFHIDSVSEGNAGLYRCLYYKPPGWSEHSDFLELLVKESSGGPDSPDTEPGSSAGT
VPGTEASGFDAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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