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Report for CCDS12425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12425.1 Public Homo sapiens 19 SLC7A9 24 110 108 CCDS HistoryNCBI Gene:11136Re-query CCDS DB by CCDS ID:12425.1Re-query CCDS DB by GeneID:11136See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000023064.9 ENSP00000023064.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000023064.9Link to Ensembl Protein Viewer:ENSP00000023064.3Re-query CCDS DB by Nucleotide ID:ENST00000023064Re-query CCDS DB by Protein ID:ENSP00000023064
Original member Current member EBI ENST00000590341.5 ENSP00000464822.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000590341.5Link to Ensembl Protein Viewer:ENSP00000464822.1Re-query CCDS DB by Nucleotide ID:ENST00000590341Re-query CCDS DB by Protein ID:ENSP00000464822
Original member Current member EBI ENST00000587772.1 ENSP00000468439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000587772.1Link to Ensembl Protein Viewer:ENSP00000468439.1Re-query CCDS DB by Nucleotide ID:ENST00000587772Re-query CCDS DB by Protein ID:ENSP00000468439
Original member Current member NCBI NM_001126335.2 NP_001119807.1 Accepted alive Link to Nucleotide Sequence:NM_001126335.2Link to Protein Sequence:NP_001119807.1Re-query CCDS DB by Nucleotide ID:NM_001126335Re-query CCDS DB by Protein ID:NP_001119807Link to BLAST:NP_001119807.1
Original member Current member NCBI NM_001243036.2 NP_001229965.1 Accepted alive Link to Nucleotide Sequence:NM_001243036.2Link to Protein Sequence:NP_001229965.1Re-query CCDS DB by Nucleotide ID:NM_001243036Re-query CCDS DB by Protein ID:NP_001229965Link to BLAST:NP_001229965.1
Original member Current member NCBI NM_014270.5 NP_055085.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014270.5Link to Protein Sequence:NP_055085.1Re-query CCDS DB by Nucleotide ID:NM_014270Re-query CCDS DB by Protein ID:NP_055085Link to BLAST:NP_055085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119807.1 487 P82251 487 100% 0 0
NP_001229965.1 487 P82251 487 100% 0 0
NP_055085.1 487 P82251 487 100% 0 0

Chromosomal Locations for CCDS 12425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32830620 32830684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32833149 32833323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32842168 32842317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32843855 32843951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32858440 32858543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32859841 32859964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32860606 32860650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32862118 32862217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32862461 32862586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32864096 32864338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32864629 32864776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32868448 32868534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGGGGATACTGGCCTGAGAAAGCGGAGAGAGGATGAGAAGTCGATCCAGAGCCAAGAGCCTAAGACCA
CCAGTCTCCAAAAGGAGCTGGGCCTCATCAGTGGCATCTCCATCATCGTGGGCACCATCATTGGCTCTGG
GATCTTCGTTTCCCCCAAGTCTGTGCTCAGCAACACGGAAGCTGTGGGGCCCTGCCTCATCATATGGGCG
GCTTGCGGGGTCCTCGCGACGCTGGGTGCCCTGTGCTTTGCGGAGCTTGGCACAATGATCACCAAGTCAG
GGGGAGAGTATCCCTACCTGATGGAGGCCTACGGGCCCATCCCCGCCTACCTCTTCTCCTGGGCCAGCCT
GATCGTCATTAAGCCCACGTCCTTCGCCATCATCTGCCTCAGCTTCTCCGAGTATGTGTGTGCGCCCTTC
TATGTGGGCTGCAAGCCTCCTCAAATCGTTGTGAAATGCCTGGCCGCCGCCGCCATCTTGTTCATCTCGA
CAGTGAACTCACTGAGCGTGCGGCTGGGAAGCTACGTCCAGAACATCTTCACCGCGGCCAAGCTGGTGAT
CGTGGCCATCATCATCATCAGCGGGCTGGTGCTCCTGGCCCAAGGAAACACAAAGAATTTTGATAATTCT
TTCGAGGGCGCCCAGCTGTCTGTGGGAGCCATCAGCCTGGCGTTTTACAATGGACTCTGGGCCTATGATG
GATGGAATCAACTCAATTACATCACAGAAGAACTTAGAAACCCTTACAGAAACCTGCCTTTGGCCATTAT
CATCGGGATCCCCCTGGTGACGGCGTGCTACATCCTCATGAACGTGTCCTACTTCACCGTGATGACTGCC
ACCGAACTCCTGCAGTCCCAGGCGGTGGCTGTGACATTTGGTGACCGTGTTCTCTATCCTGCTTCTTGGA
TCGTTCCACTTTTTGTGGCATTTTCAACCATCGGTGCTGCTAACGGGACCTGCTTCACAGCGGGCAGACT
CATTTACGTGGCGGGCCGGGAGGGTCACATGCTCAAAGTGCTTTCTTACATCAGCGTCAGGCGCCTCACT
CCAGCCCCCGCCATCATCTTTTATGGTATCATAGCAACGATTTATATCATCCCTGGTGACATAAACTCGT
TAGTCAATTATTTCAGCTTTGCCGCATGGCTGTTTTATGGCCTGACGATTCTAGGACTCATCGTGATGAG
ATTTACAAGGAAAGAGCTGGAAAGGCCTATCAAGGTGCCCGTAGTCATTCCCGTCTTGATGACACTCATC
TCTGTGTTTTTGGTTCTGGCTCCAATCATCAGCAAGCCCACCTGGGAGTACCTCTACTGTGTGCTGTTTA
TATTAAGCGGCCTTTTATTTTACTTCCTGTTTGTCCACTACAAGTTTGGATGGGCTCAGAAAATCTCAAA
GCCGATTACCATGCACCTTCAGATGCTAATGGAAGTGGTCCCACCGGAGGAAGACCCTGAGTAA

Translation (487 aa):
MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWA
ACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPF
YVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNS
FEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTA
TELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLT
PAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLI
SVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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