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Report for CCDS8297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8297.1 Public Homo sapiens 11 GPR83 24 110 108 CCDS HistoryNCBI Gene:10888Re-query CCDS DB by CCDS ID:8297.1Re-query CCDS DB by GeneID:10888See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243673.7 ENSP00000243673.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243673.7Link to Ensembl Protein Viewer:ENSP00000243673.2Re-query CCDS DB by Nucleotide ID:ENST00000243673Re-query CCDS DB by Protein ID:ENSP00000243673
Original member Current member NCBI NM_016540.4 NP_057624.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016540.4Link to Protein Sequence:NP_057624.3Re-query CCDS DB by Nucleotide ID:NM_016540Re-query CCDS DB by Protein ID:NP_057624Link to BLAST:NP_057624.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057624.3 423 Q9NYM4-1 423 100% 0 0

Chromosomal Locations for CCDS 8297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94380149 94380773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94393485 94393618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94396399 94396524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94400861 94401247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGTCCCTCACCTCTTGCTGCTCTGTCTCCTCCCCTTGGTGCGAGCCACCGAGCCCCACGAGGGCCGGG
CCGACGAGCAGAGCGCGGAGGCGGCCCTGGCCGTGCCCAATGCCTCGCACTTCTTCTCTTGGAACAACTA
CACCTTCTCCGACTGGCAGAACTTTGTGGGCAGGAGGCGCTACGGCGCTGAGTCCCAGAACCCCACGGTG
AAAGCCCTGCTCATTGTGGCTTACTCCTTCATCATTGTCTTCTCACTCTTTGGCAACGTCCTGGTCTGTC
ATGTCATCTTCAAGAACCAGCGAATGCACTCGGCCACCAGCCTCTTCATCGTCAACCTGGCAGTTGCCGA
CATAATGATCACGCTGCTCAACACCCCCTTCACTTTGGTTCGCTTTGTGAACAGCACATGGATATTTGGG
AAGGGCATGTGCCATGTCAGCCGCTTTGCCCAGTACTGCTCACTGCACGTCTCAGCACTGACACTGACAG
CCATTGCGGTGGATCGCCACCAGGTCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGT
CATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTA
TTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCTGCCTGCCAGACTTCCCTGAGCCAGCTGACC
TCTTCTGGAAGTACCTGGACTTGGCCACCTTCATCCTGCTCTACATCCTGCCCCTCCTCATCATCTCTGT
GGCCTACGCTCGTGTGGCCAAGAAACTGTGGCTGTGTAATATGATTGGCGATGTGACCACAGAGCAGTAC
TTTGCCCTGCGGCGCAAAAAGAAGAAGACCATCAAGATGTTGATGCTGGTGGTAGTCCTCTTTGCCCTCT
GCTGGTTCCCCCTCAACTGCTACGTCCTCCTCCTGTCCAGCAAGGTCATCCGCACCAACAATGCCCTCTA
CTTTGCCTTCCACTGGTTTGCCATGAGCAGCACCTGCTATAACCCCTTCATATACTGCTGGCTGAACGAG
AACTTCAGGATTGAGCTAAAGGCATTACTGAGCATGTGTCAAAGACCTCCCAAGCCTCAGGAGGACAGGC
CACCCTCCCCAGTTCCTTCCTTCAGGGTGGCCTGGACAGAGAAGAATGATGGCCAGAGGGCTCCCCTTGC
CAATAACCTCCTGCCCACCTCCCAACTCCAGTCTGGGAAGACAGACCTGTCATCTGTGGAACCCATTGTG
ACGATGAGTTAG

Translation (423 aa):
MVPHLLLLCLLPLVRATEPHEGRADEQSAEAALAVPNASHFFSWNNYTFSDWQNFVGRRRYGAESQNPTV
KALLIVAYSFIIVFSLFGNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVNSTWIFG
KGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMHPLKPRISITKGVIYIAVIWTMATFFSLPHAICQKL
FTFKYSEDIVRSLCLPDFPEPADLFWKYLDLATFILLYILPLLIISVAYARVAKKLWLCNMIGDVTTEQY
FALRRKKKKTIKMLMLVVVLFALCWFPLNCYVLLLSSKVIRTNNALYFAFHWFAMSSTCYNPFIYCWLNE
NFRIELKALLSMCQRPPKPQEDRPPSPVPSFRVAWTEKNDGQRAPLANNLLPTSQLQSGKTDLSSVEPIV
TMS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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