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Report for CCDS54310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54310.1 Public Homo sapiens 19 ZNF578 24 110 108 CCDS HistoryNCBI Gene:147660Re-query CCDS DB by CCDS ID:54310.1Re-query CCDS DB by GeneID:147660See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54310.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421239.7 ENSP00000459216.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421239.7Link to Ensembl Protein Viewer:ENSP00000459216.1Re-query CCDS DB by Nucleotide ID:ENST00000421239Re-query CCDS DB by Protein ID:ENSP00000459216
Original member Current member NCBI NM_001099694.2 NP_001093164.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099694.2Link to Protein Sequence:NP_001093164.1Re-query CCDS DB by Nucleotide ID:NM_001099694Re-query CCDS DB by Protein ID:NP_001093164Link to BLAST:NP_001093164.1
Original member Current member NCBI NM_001366182.2 NP_001353111.1 Accepted alive Link to Nucleotide Sequence:NM_001366182.2Link to Protein Sequence:NP_001353111.1Re-query CCDS DB by Nucleotide ID:NM_001366182Re-query CCDS DB by Protein ID:NP_001353111Link to BLAST:NP_001353111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093164.1 590 Q96N58 590 100% 0 0
NP_001353111.1 590 Q96N58 590 100% 0 0

Chromosomal Locations for CCDS 54310.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52501846 52501908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52504655 52504781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52510572 52512154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGTTACATGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACGCT
TGACTTTCAGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATTCCTGAACCCTGCGCAGAGGGC
TTTGTACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAACGCATG
ATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGATGTTGCAAAGACATG
AAAGTTATCACACTGGAGATTTTTGCTTCCAGGAAATTGAAAAAGATATTCATGACTTTGAGTTTCAGTC
ACAAAAAGATGAAAGAAATGGCCATGAAGCATCCATGCCAAAAATCAAAGAGTTGATGGGTAGCACAGAC
CGACATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTTGCATC
TTCCTGAACTCCACATATTTCAGCCCGAAGAGAAAATTGCTAATCAAGTGGAGAAGTCTGTCAACGATGC
TTCCTCAATTTCAACATCCCAAAGAATTTCTTGTAGGCCTGAAACACATACTCCTAATAACTATGGGAAT
AATTTTTTCCATTCATCATTACTCACACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTA
ATGAGACTGGCGAAGCCTTTAATTGTAGCTCATTTGTAAGGAAACATCAGATAATCCATTTAGGAGAAAA
ACAATATAAATTTGATATATGTGGCAAAGTCTTTAATGAGAAGCGATACCTTGCACGCCATCGTAGATGT
CACACTAGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTACAAGTCATCCCTGACAT
GCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAGTCCTTCAGTTACAA
GTCATCCCTTACATGCCATCATAGGTGTCACACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGAAAG
TCCTTCAGTTACAAGTCATCCCTTAGATGCCATCGTAGACTTCATACTGGAATAAAACCTTACAAGTGTA
ATGAGTGTGGCAAGATGTTTGGTCAAAATTCAACCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAA
ACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGTCATCATAGACTT
CATACTGGAGAGAAACCTTACAAGTGTAATGACTGTGGTAAGGCTTTTATTCATCAGTCAAGCCTTGCAC
GTCATCATAGACTTCATACTGGAGAGAAATCTTACAAATGTGAAGAATGTGACAGAGTTTTCAGTCAGAA
ATCAAACCTTGAGAGACACAAGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTCACAAG
ACCTTCAGTCACAGGTCATCTCTTCCATGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTA
ATGAATGTGGGAAGACTTTTAATGTACAGTCACACCTTTCACGTCATCATAGACTTCATACTGGAGAGAA
ACCTTACAAATGTAAGGTTTGTGACAAGGCTTTCATGTGCCATTCTTATCTGGCAAACCATACTAGAATT
CATAGCGGAGAGAAACCTTACAAGTGTAATGAGTGTGGTAAGGCTCACAATCACTTGATTGATTCATCAA
TCAAGCCTTGCATGTCATCATAG

Translation (590 aa):
MLHEEAAQKRKGKEPGMALPQGRLTFRDVAIEFSLAEWKFLNPAQRALYREVMLENYRNLEAVDISSKRM
MKEVLSTGQGNTEVIHTGMLQRHESYHTGDFCFQEIEKDIHDFEFQSQKDERNGHEASMPKIKELMGSTD
RHDQRHAGNKPIKDQLGLSFHLHLPELHIFQPEEKIANQVEKSVNDASSISTSQRISCRPETHTPNNYGN
NFFHSSLLTQKQEVHMREKSFQCNETGEAFNCSSFVRKHQIIHLGEKQYKFDICGKVFNEKRYLARHRRC
HTSEKPYKCNECGKSFSYKSSLTCHRRCHTGEKPYKCNECGKSFSYKSSLTCHHRCHTGEKPYKCNECGK
SFSYKSSLRCHRRLHTGIKPYKCNECGKMFGQNSTLVIHKAIHTGEKPYKCNECGKAFNQQSHLSRHHRL
HTGEKPYKCNDCGKAFIHQSSLARHHRLHTGEKSYKCEECDRVFSQKSNLERHKIIHTGEKPYKCNECHK
TFSHRSSLPCHRRLHSGEKPYKCNECGKTFNVQSHLSRHHRLHTGEKPYKCKVCDKAFMCHSYLANHTRI
HSGEKPYKCNECGKAHNHLIDSSIKPCMSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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