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Report for CCDS4963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4963.1 Public Homo sapiens 6 KHDRBS2 24 110 108 CCDS HistoryNCBI Gene:202559Re-query CCDS DB by CCDS ID:4963.1Re-query CCDS DB by GeneID:202559See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281156.5 ENSP00000281156.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281156.5Link to Ensembl Protein Viewer:ENSP00000281156.3Re-query CCDS DB by Nucleotide ID:ENST00000281156Re-query CCDS DB by Protein ID:ENSP00000281156
Original member Current member NCBI NM_152688.4 NP_689901.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152688.4Link to Protein Sequence:NP_689901.2Re-query CCDS DB by Nucleotide ID:NM_152688Re-query CCDS DB by Protein ID:NP_689901Link to BLAST:NP_689901.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689901.2 349 Q5VWX1 349 100% 0 0

Chromosomal Locations for CCDS 4963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 61680963 61681060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61697195 61697253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61732682 61732764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61894635 61894833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61901244 61901371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61978066 61978212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 62047878 62047994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 62177185 62177312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 62285858 62285948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGAAGAGGAGAAATATTTGCCTGAGCTGATGGCAGAGAAAGATAGCCTGGATCCATCTTTTGTGCATG
CGTCGCGCCTTTTGGCAGAAGAAATTGAAAAGTTTCAAGGTTCTGATGGAAAAAAGGAAGACGAAGAAAA
GAAGTATCTTGATGTCATCAGCAACAAAAACATAAAGCTCTCAGAAAGAGTACTGATTCCTGTCAAGCAG
TATCCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAGGAAG
AAACAGGTGCTAAAATGTCTATCCTGGGCAAAGGATCAATGAGAGATAAAGCTAAGGAAGAAGAACTAAG
GAAGAGTGGGGAAGCCAAATATGCCCACTTGAGTGATGAGCTTCATGTATTAATTGAAGTGTTTGCTCCA
CCTGGGGAAGCTTATTCACGTATGAGTCATGCATTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACA
ATGATGAAATTCGTCAGGAACAACTACGTGAATTATCTTACTTAAATGGCTCAGAGGACTCTGGTCGTGG
CAGAGGTATTAGAGGCAGAGGGATCAGAATAGCTCCCACAGCTCCTTCAAGGGGCCGTGGGGGTGCCATT
CCTCCTCCCCCACCACCTGGACGAGGTGTTCTCACCCCTCGGGGAAGCACTGTAACCCGTGGAGCGCTTC
CAGTGCCACCTGTAGCAAGAGGTGTCCCTACCCCTCGAGCCCGGGGGGCACCAACAGTGCCAGGATACAG
GGCACCTCCTCCTCCAGCCCATGAAGCTTATGAAGAATATGGTTATGATGATGGCTACGGGGGTGAATAT
GATGACCAGACCTATGAGACTTATGATAACAGCTATGCGACCCAAACACAAAGTGTGCCTGAATACTATG
ACTACGGTCATGGAGTAAGTGAGGATGCCTATGACAGCTACGCACCAGAAGAATGGGCCACAACCCGCTC
TAGCTTGAAGGCACCACCGCAAAGGTCAGCCAGAGGGGGATACAGGGAACACCCCTATGGTAGATATTGA

Translation (349 aa):
MEEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQ
YPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAP
PGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGIRGRGIRIAPTAPSRGRGGAI
PPPPPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRARGAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEY
DDQTYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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