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Report for CCDS13919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13919.1 Public Homo sapiens 22 APOL6 24 110 108 CCDS HistoryNCBI Gene:80830Re-query CCDS DB by CCDS ID:13919.1Re-query CCDS DB by GeneID:80830See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409652.5 ENSP00000386280.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409652.5Link to Ensembl Protein Viewer:ENSP00000386280.3Re-query CCDS DB by Nucleotide ID:ENST00000409652Re-query CCDS DB by Protein ID:ENSP00000386280
Original member Current member NCBI NM_030641.4 NP_085144.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030641.4Link to Protein Sequence:NP_085144.1Re-query CCDS DB by Nucleotide ID:NM_030641Re-query CCDS DB by Protein ID:NP_085144Link to BLAST:NP_085144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085144.1 343 Q9BWW8 343 100% 0 0

Chromosomal Locations for CCDS 13919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 35656426 35656475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35658615 35659596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGACAACCAGGCGGAGAGAGAAAGTGAGGCTGGTGTTGGTTTGCAAAGGGATGAGGATGACGCTCCTC
TGTGTGAAGACGTGGAGCTACAAGACGGAGATCTGTCCCCCGAAGAAAAAATATTTTTGAGAGAATTTCC
CAGATTGAAAGAAGATCTGAAAGGGAACATTGACAAGCTCCGTGCCCTCGCAGACGATATTGACAAAACC
CACAAGAAATTCACCAAGGCTAACATGGTGGCCACCTCTACTGCTGTCATCTCTGGAGTGATGAGCCTCC
TGGGTTTAGCCCTTGCCCCAGCAACAGGAGGAGGAAGCCTGCTGCTCTCCACCGCTGGTCAAGGTTTGGC
AACAGCAGCTGGGGTCACCAGCATCGTGAGTGGTACGTTGGAACGCTCCAAAAATAAAGAAGCCCAAGCA
CGGGCGGAAGACATACTGCCCACCTACGACCAAGAGGACAGGGAGGATGAGGAAGAGAAGGCAGACTATG
TCACAGCTGCTGGAAAGATTATCTATAATCTTAGAAACACCTTGAAGTATGCCAAGAAAAACGTCCGTGC
ATTTTGGAAACTCAGAGCCAACCCACGCTTGGCCAATGCTACCAAGCGTCTTCTGACCACTGGCCAAGTC
TCCTCCCGGAGCCGCGTGCAGGTGCAAAAGGCCTTTGCGGGAACAACACTGGCGATGACCAAAAATGCTC
GCGTGCTGGGAGGTGTGATGTCCGCCTTCTCCCTTGGCTATGACTTGGCCACTCTCTCAAAGGAATGGAA
GCACCTGAAGGAAGGAGCAAGGACAAAGTTTGCGGAAGAGTTGAGAGCCAAGGCCTTGGAGCTGGAGAGG
AAACTCACAGAACTCACCCAGCTCTACAAGAGCTTGCAGCAGAAAGTGAGGTCAAGGGCCAGAGGGGTGG
GGAAGGATTTAACTGGGACCTGCGAAACCGAGGCTTACTGGAAGGAGTTAAGGGAGCATGTGTGGATGTG
GCTGTGGCTGTGTGTGTGTCTGTGTGTCTGTGTGTATGTACAGTTTACATGA

Translation (343 aa):
MDNQAERESEAGVGLQRDEDDAPLCEDVELQDGDLSPEEKIFLREFPRLKEDLKGNIDKLRALADDIDKT
HKKFTKANMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQGLATAAGVTSIVSGTLERSKNKEAQA
RAEDILPTYDQEDREDEEEKADYVTAAGKIIYNLRNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQV
SSRSRVQVQKAFAGTTLAMTKNARVLGGVMSAFSLGYDLATLSKEWKHLKEGARTKFAEELRAKALELER
KLTELTQLYKSLQQKVRSRARGVGKDLTGTCETEAYWKELREHVWMWLWLCVCLCVCVYVQFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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