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Report for CCDS7987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7987.1 Public Homo sapiens 11 MS4A5 24 110 108 CCDS HistoryNCBI Gene:64232Re-query CCDS DB by CCDS ID:7987.1Re-query CCDS DB by GeneID:64232See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300190.7 ENSP00000300190.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300190.7Link to Ensembl Protein Viewer:ENSP00000300190.2Re-query CCDS DB by Nucleotide ID:ENST00000300190Re-query CCDS DB by Protein ID:ENSP00000300190
Original member Current member NCBI NM_023945.3 NP_076434.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023945.3Link to Protein Sequence:NP_076434.2Re-query CCDS DB by Nucleotide ID:NM_023945Re-query CCDS DB by Protein ID:NP_076434Link to BLAST:NP_076434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076434.2 200 Q9H3V2 200 100% 0 0

Chromosomal Locations for CCDS 7987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60429675 60429827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60430796 60430924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60432411 60432467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60433765 60433917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60447649 60447759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGATTCAAGCACCGCACACAGTCCGGTGTTTCTGGTATTTCCTCCAGAAATCACTGCTTCAGAATATG
AGTCCACAGAACTTTCAGCCACGACCTTTTCAACTCAAAGCCCCTTGCAAAAATTATTTGCTAGAAAAAT
GAAAATCTTAGGGACTATCCAGATCCTGTTTGGAATTATGACCTTTTCTTTTGGAGTTATCTTCCTTTTC
ACCTTGTTAAAACCATATCCAAGGTTTCCCTTTATATTTCTTTCAGGATATCCATTCTGGGGCTCTGTTT
TGTTCATTAATTCTGGAGCCTTCCTAATTGCAGTGAAAAGAAAAACCACAGAAACTCTGATAATATTGAG
CCGAATAATGAATTTTCTTAGTGCCCTGGGAGCAATAGCTGGAATCATTCTCCTCACATTTGGTTTCATC
CTAGATCAAAACTACATTTGTGGTTATTCTCACCAAAATAGTCAGTGTAAGGCTGTTACTGTCCTGTTCT
TGGGAATTTTGATTACATTGATGACTTTCAGCATTATTGAATTATTCATTTCTCTGCCTTTCTCAATTTT
GGGGTGCCACTCAGAGGATTGTGATTGTGAACAATGTTGTTGA

Translation (200 aa):
MDSSTAHSPVFLVFPPEITASEYESTELSATTFSTQSPLQKLFARKMKILGTIQILFGIMTFSFGVIFLF
TLLKPYPRFPFIFLSGYPFWGSVLFINSGAFLIAVKRKTTETLIILSRIMNFLSALGAIAGIILLTFGFI
LDQNYICGYSHQNSQCKAVTVLFLGILITLMTFSIIELFISLPFSILGCHSEDCDCEQCC


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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