NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1275.1 Public Homo sapiens 1 DPT 24 110 108 CCDS HistoryNCBI Gene:1805Re-query CCDS DB by CCDS ID:1275.1Re-query CCDS DB by GeneID:1805See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367817.4 ENSP00000356791.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367817.4Link to Ensembl Protein Viewer:ENSP00000356791.3Re-query CCDS DB by Nucleotide ID:ENST00000367817Re-query CCDS DB by Protein ID:ENSP00000356791
Original member Current member NCBI NM_001937.5 NP_001928.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001937.5Link to Protein Sequence:NP_001928.2Re-query CCDS DB by Nucleotide ID:NM_001937Re-query CCDS DB by Protein ID:NP_001928Link to BLAST:NP_001928.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001928.2 201 Q07507 201 100% 0 0

Chromosomal Locations for CCDS 1275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168696549 168696615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168701017 168701124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168714221 168714346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168728870 168729174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGACCTCAGTCTTCTCTGGGTACTTCTGCCCCTAGTCACCATGGCCTGGGGCCAGTATGGCGATTATG
GATACCCATACCAGCAGTATCATGACTACAGCGATGATGGGTGGGTGAATTTGAACCGGCAAGGCTTCAG
CTACCAGTGTCCCCAGGGGCAGGTGATAGTGGCCGTGAGGAGCATCTTCAGCAAGAAGGAAGGTTCTGAC
AGACAATGGAACTACGCCTGCATGCCCACGCCACAGAGCCTCGGGGAACCCACGGAGTGCTGGTGGGAGG
AGATCAACAGGGCTGGCATGGAATGGTACCAGACGTGCTCCAACAATGGGCTGGTGGCAGGATTCCAGAG
CCGCTACTTCGAGTCAGTGCTGGATCGGGAGTGGCAGTTTTACTGTTGTCGCTACAGCAAGAGGTGCCCA
TATTCCTGCTGGCTAACAACAGAATATCCAGGTCACTATGGTGAGGAAATGGACATGATTTCCTACAATT
ATGATTACTATATCCGAGGAGCAACAACCACTTTCTCTGCAGTGGAAAGGGATCGCCAGTGGAAGTTCAT
AATGTGCCGGATGACTGAATACGACTGTGAATTTGCAAATGTTTAG

Translation (201 aa):
MDLSLLWVLLPLVTMAWGQYGDYGYPYQQYHDYSDDGWVNLNRQGFSYQCPQGQVIVAVRSIFSKKEGSD
RQWNYACMPTPQSLGEPTECWWEEINRAGMEWYQTCSNNGLVAGFQSRYFESVLDREWQFYCCRYSKRCP
YSCWLTTEYPGHYGEEMDMISYNYDYYIRGATTTFSAVERDRQWKFIMCRMTEYDCEFANV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH