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Report for CCDS31681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31681.1 Public Homo sapiens 11 APOA4 24 110 108 CCDS HistoryNCBI Gene:337Re-query CCDS DB by CCDS ID:31681.1Re-query CCDS DB by GeneID:337See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357780.5 ENSP00000350425.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357780.5Link to Ensembl Protein Viewer:ENSP00000350425.3Re-query CCDS DB by Nucleotide ID:ENST00000357780Re-query CCDS DB by Protein ID:ENSP00000350425
Original member Current member NCBI NM_000482.4 NP_000473.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000482.4Link to Protein Sequence:NP_000473.2Re-query CCDS DB by Nucleotide ID:NM_000482Re-query CCDS DB by Protein ID:NP_000473Link to BLAST:NP_000473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000473.2 396 P06727 396 100% 0 0

Chromosomal Locations for CCDS 31681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116820867 116821881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116822659 116822785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116823143 116823191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGTTCCTGAAGGCCGTGGTCCTGACCCTGGCCCTGGTGGCTGTCGCCGGAGCCAGGGCTGAGGTCAGTG
CTGACCAGGTGGCCACGGTGATGTGGGACTACTTCAGCCAGCTGAGCAACAATGCCAAGGAGGCCGTGGA
ACATCTCCAGAAATCTGAACTCACCCAGCAACTCAATGCCCTCTTCCAGGACAAACTTGGAGAAGTGAAC
ACTTACGCAGGTGACCTGCAGAAGAAGCTGGTGCCCTTTGCCACCGAGCTGCATGAACGCCTGGCCAAGG
ACTCGGAGAAACTGAAGGAGGAGATTGGGAAGGAGCTGGAGGAGCTGAGGGCCCGGCTGCTGCCCCATGC
CAATGAGGTGAGCCAGAAGATCGGGGACAACCTGCGAGAGCTTCAGCAGCGCCTGGAGCCCTACGCGGAC
CAGCTGCGCACCCAGGTCAGCACGCAGGCCGAGCAGCTGCGGCGCCAGCTGACCCCCTACGCACAGCGCA
TGGAGAGAGTGCTGCGGGAGAACGCCGACAGCCTGCAGGCCTCGCTGAGGCCCCACGCCGACGAGCTCAA
GGCCAAGATCGACCAGAACGTGGAGGAGCTCAAGGGACGCCTTACGCCCTACGCTGACGAATTCAAAGTC
AAGATTGACCAGACCGTGGAGGAGCTGCGCCGCAGCCTGGCTCCCTATGCTCAGGACACGCAGGAGAAGC
TCAACCACCAGCTTGAGGGCCTGACCTTCCAGATGAAGAAGAACGCCGAGGAGCTCAAGGCCAGGATCTC
GGCCAGTGCCGAGGAGCTGCGGCAGAGGCTGGCGCCCTTGGCCGAGGACGTGCGTGGCAACCTGAGGGGC
AACACCGAGGGGCTGCAGAAGTCACTGGCAGAGCTGGGTGGGCACCTGGACCAGCAGGTGGAGGAGTTCC
GACGCCGGGTGGAGCCCTACGGGGAAAACTTCAACAAAGCCCTGGTGCAGCAGATGGAACAGCTCAGGCA
GAAACTGGGCCCCCATGCGGGGGACGTGGAAGGCCACTTGAGCTTCCTGGAGAAGGACCTGAGGGACAAG
GTCAACTCCTTCTTCAGCACCTTCAAGGAGAAAGAGAGCCAGGACAAGACTCTCTCCCTCCCTGAGCTGG
AGCAACAGCAGGAACAGCAGCAGGAGCAGCAGCAGGAGCAGGTGCAGATGCTGGCCCCTTTGGAGAGCTG
A

Translation (396 aa):
MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNALFQDKLGEVN
TYAGDLQKKLVPFATELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYAD
QLRTQVSTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKV
KIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRG
NTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLRDK
VNSFFSTFKEKESQDKTLSLPELEQQQEQQQEQQQEQVQMLAPLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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