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Report for CCDS10571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10571.1 Public Homo sapiens 16 RPS15A 24 110 108 CCDS HistoryNCBI Gene:6210Re-query CCDS DB by CCDS ID:10571.1Re-query CCDS DB by GeneID:6210See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322989.8 ENSP00000318646.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322989.8Link to Ensembl Protein Viewer:ENSP00000318646.4Re-query CCDS DB by Nucleotide ID:ENST00000322989Re-query CCDS DB by Protein ID:ENSP00000318646
Original member Current member EBI ENST00000563390.5 ENSP00000457000.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563390.5Link to Ensembl Protein Viewer:ENSP00000457000.1Re-query CCDS DB by Nucleotide ID:ENST00000563390Re-query CCDS DB by Protein ID:ENSP00000457000
Original member Current member EBI ENST00000565420.5 ENSP00000458115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565420.5Link to Ensembl Protein Viewer:ENSP00000458115.1Re-query CCDS DB by Nucleotide ID:ENST00000565420Re-query CCDS DB by Protein ID:ENSP00000458115
Original member Current member EBI ENST00000572008.5 ENSP00000458528.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572008.5Link to Ensembl Protein Viewer:ENSP00000458528.1Re-query CCDS DB by Nucleotide ID:ENST00000572008Re-query CCDS DB by Protein ID:ENSP00000458528
Original member Current member NCBI NM_001019.5 NP_001010.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001019.5Link to Protein Sequence:NP_001010.2Re-query CCDS DB by Nucleotide ID:NM_001019Re-query CCDS DB by Protein ID:NP_001010Link to BLAST:NP_001010.2
Original member Current member NCBI NM_001030009.2 NP_001025180.1 Accepted alive Link to Nucleotide Sequence:NM_001030009.2Link to Protein Sequence:NP_001025180.1Re-query CCDS DB by Nucleotide ID:NM_001030009Re-query CCDS DB by Protein ID:NP_001025180Link to BLAST:NP_001025180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010.2 130 P62244 130 100% 0 0
NP_001025180.1 130 P62244 130 100% 0 0

Chromosomal Locations for CCDS 10571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18783009 18783102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18784738 18784823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18788063 18788142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18788981 18789113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAACGCC
AGGTGCTTATTAGGCCGTGCTCCAAAGTCATCGTCCGGTTTCTCACTGTGATGATGAAGCATGGTTACAT
TGGCGAATTTGAAATCATTGATGACCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGCTAAAC
AAGTGTGGGGTGATCAGCCCCAGATTTGACGTGCAACTCAAAGACCTGGAAAAATGGCAGAATAATCTGC
TTCCATCCCGCCAGTTTGGTTTCATTGTACTGACAACCTCAGCTGGCATCATGGACCATGAAGAAGCAAG
ACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Translation (130 aa):
MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN
KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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