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Report for CCDS12127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12127.1 Public Homo sapiens 19 FSD1 24 110 108 CCDS HistoryNCBI Gene:79187Re-query CCDS DB by CCDS ID:12127.1Re-query CCDS DB by GeneID:79187See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221856.11 ENSP00000221856.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221856.11Link to Ensembl Protein Viewer:ENSP00000221856.5Re-query CCDS DB by Nucleotide ID:ENST00000221856Re-query CCDS DB by Protein ID:ENSP00000221856
Original member Current member NCBI NM_024333.3 NP_077309.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024333.3Link to Protein Sequence:NP_077309.1Re-query CCDS DB by Nucleotide ID:NM_024333Re-query CCDS DB by Protein ID:NP_077309Link to BLAST:NP_077309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077309.1 496 Q9BTV5 496 100% 0 0

Chromosomal Locations for CCDS 12127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4304747 4304761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4305946 4306041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4306198 4306329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4307882 4307983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4310273 4310295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4310475 4310596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4311842 4312051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4317182 4317280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4318346 4318505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4318872 4318951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4322986 4323237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4323348 4323436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4323533 4323643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGAAGAACAGAGGGAGGCCCTGAGGAAGATCATCAAAACACTGGCTGTGAAGAATGAAGAAATTCAGA
GCTTTATCTACTCCCTGAAACAGATGCTGCTGAACGTGGAGGCGAACTCGGCGAAGGTGCAGGAGGACCT
CGAAGCAGAGTTCCAGTCCCTCTTCTCCCTCCTGGAGGAGCTGAAAGAAGGCATGCTTATGAAGATAAAA
CAGGACCGTGCCAGCCGTACCTACGAGCTGCAGAACCAGCTGGCTGCCTGCACGCGGGCCCTGGAGAGCT
CCGAGGAGCTTCTGGAGACAGCCAACCAGACTCTGCAGGCCATGGACAGCGAGGACTTTCCTCAGGCTGC
CAAGCAAATCAAAGATGGAGTGACCATGGCCCCTGCCTTCCGGCTATCATTGAAAGCGAAGGTCAGTGAC
AACATGAGTCACCTCATGGTGGACTTCGCGCAAGAGCGGCAGATGCTACAGGCACTCAAGTTCCTGCCTG
TGCCCAGCGCACCCGTGATCGACCTGGCTGAGTCCCTGGTGGCAGATAACTGTGTGACCCTGGTGTGGCG
CATGCCGGATGAGGACAGCAAGATTGACCACTACGTGCTGGAGTACCGGCGGACCAACTTCGAGGGCCCG
CCCCGCCTCAAGGAGGACCAGCCCTGGATGGTCATCGAGGGCATCCGGCAGACAGAGTACACCCTGACAG
GTCTCAAGTTTGACATGAAATACATGAACTTCCGTGTGAAGGCCTGTAACAAGGCAGTTGCAGGAGAGTT
CTCTGAGCCGGTGACTCTGGAGACACCAGCGTTCATGTTCCGCCTGGATGCGTCCACATCCCACCAGAAC
CTGCGGGTGGATGATCTCTCCGTGGAGTGGGACGCTATGGGCGGGAAGGTGCAGGATATCAAGGCTCGCG
AGAAAGATGGCAAGGGGCGGACGGCGTCTCCCATCAACTCCCCAGCCAGAGGTACTCCATCTCCCAAGAG
GATGCCCTCAGGTCGTGGGGGACGGGACCGCTTCACCGCTGAGTCCTACACAGTTCTGGGGGACACGCTG
ATCGACGGCGGGGAGCATTACTGGGAGGTGCGCTACGAGCCGGACAGCAAGGCGTTCGGCGTGGGCGTGG
CCTACCGCAGCCTGGGCCGCTTCGAGCAACTGGGCAAGACGGCCGCCTCCTGGTGCCTGCACGTCAACAA
TTGGCTGCAGGTCAGCTTCACGGCCAAGCACGCCAACAAGGTCAAGGTGCTGGACGCCCCCGTGCCCGAC
TGCCTGGGTGTGCACTGTGACTTCCACCAAGGCCTCCTGTCCTTCTACAATGCCCGCACCAAACAAGTGC
TGCACACTTTCAAGACCAGGTTCACACAGCCGCTGCTGCCTGCTTTCACGGTATGGTGTGGCAGCTTCCA
GGTGACGACAGGCCTGCAGGTCCCCAGTGCTGTGCGCTGCCTGCAAAAGCGAGGCAGTGCTACCAGCAGC
TCCAACACCAGCCTCACCTAG

Translation (496 aa):
MEEQREALRKIIKTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIK
QDRASRTYELQNQLAACTRALESSEELLETANQTLQAMDSEDFPQAAKQIKDGVTMAPAFRLSLKAKVSD
NMSHLMVDFAQERQMLQALKFLPVPSAPVIDLAESLVADNCVTLVWRMPDEDSKIDHYVLEYRRTNFEGP
PRLKEDQPWMVIEGIRQTEYTLTGLKFDMKYMNFRVKACNKAVAGEFSEPVTLETPAFMFRLDASTSHQN
LRVDDLSVEWDAMGGKVQDIKAREKDGKGRTASPINSPARGTPSPKRMPSGRGGRDRFTAESYTVLGDTL
IDGGEHYWEVRYEPDSKAFGVGVAYRSLGRFEQLGKTAASWCLHVNNWLQVSFTAKHANKVKVLDAPVPD
CLGVHCDFHQGLLSFYNARTKQVLHTFKTRFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSS
SNTSLT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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