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Report for CCDS50150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50150.1 Public Mus musculus 17 Mpnd 23 108 98 CCDS HistoryNCBI Gene:68047Re-query CCDS DB by CCDS ID:50150.1Re-query CCDS DB by GeneID:68047See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149441.7 ENSMUSP00000119745.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149441.7Link to Ensembl Protein Viewer:ENSMUSP00000119745.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149441Re-query CCDS DB by Protein ID:ENSMUSP00000119745
Original member Current member NCBI NM_026530.5 NP_080806.4 Accepted alive Link to Nucleotide Sequence:NM_026530.5Link to Protein Sequence:NP_080806.4Re-query CCDS DB by Nucleotide ID:NM_026530Re-query CCDS DB by Protein ID:NP_080806Link to BLAST:NP_080806.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080806.4 487 Q3TV65 487 100% 0 0

Chromosomal Locations for CCDS 50150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56009250 56009256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56009330 56009586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56010277 56010513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56010988 56011111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56011618 56011699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56011866 56011962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56012271 56012343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56012416 56012492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56014941 56015109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56015208 56015278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56015471 56015560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56015904 56015996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56016516 56016602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCAGCTCCCGAGTCTCTGTCTCCCGGGGCCACGGCCGAGGAGGCGCCGGAGGAGGATGAGGACGACG
CGGAGGCCGAGGACCCCGAGCGCGGGACGGGTAGCGGAGGGCGCAGCGGCAGCCTCGGTGGCAGCGGAGG
CGGCACGGCAGGGCCTGGGATGGCCCTAGGGGGCGCGCTCACGAGGCGCGCGGTCACGCTTCGGGTGCTG
CTCAAAGACGAGCTGCTGGAGCCCGGTGAGGGGGTGCTATCCATCTACTACCTGGGCAGGAAGTTTACTG
GGGACCTGCAGCTGGATGGCAGGATCGTGTGGCAGGAAACTGGACAAGTCTTCAACTCACCCAGCGCCTG
GGCCACACACTGCAAGAAGCTCGTCAACCCAGCCAAGAAATCTGGCTGTGGCTGGGCCTCTGTCAAGTAC
AAGGGCCAGAAGCTGGACAAATACAAGGCCGCCTGGCTTCGCCGGCACCAGCTACATATGCCTGTAGCTA
CGGCCGATGAGAGTCCCACCAGTGAAGGGGAGGAGGAAGAACTGCTGTTGGAGGAGGAGGAAGAAGATGT
GCTGGCTGGGGTCTCATCAGAGGACAAAGGCCACAGACCCCCTGGGAAGGGTTCCTTGGAGCCAGAGGCC
ACACCCCCAGGGAAGCGTATGGACAAGGTGCCAGTGCCCATCCGTTACTGCATGCTGGGCAGCCGAGACT
CCGCCAGGAACCCCCACACTCTGGTAGAAGTAACATCCTTTGCTGCCATCAACAAGTTCCAGCCATTCAA
CGTGGCCGTTTCCAGTAATGTGCTGTTCCTCTTGGACTTCCACTGTCACCTGACTCGGAGTGAGGTCGTG
GGCTACCTTGGTGGTCGCTGGGACATCAACAATCAGATGCTGACCGTGCTGAGAGCCTTCCCCTGCAGGA
GTCGGCTGGGGGACACTGATACTGCAGCCACGGTTGAGGAGGAGATCTACCAGGTCCTGTTCCTTCGAGG
CCTGTCCCTGGTGGGCTGGTACCACAGCCACCCACACAGCCCTGCAGTACCCTCCTTGCAGGACATTGAC
GCACAGATGGAGTACCAGTTGAGACTGCAAGGCTCCAGCAATGGCTTCCAGCCCTGCCTGGCCCTGCTGT
GCTCCCCCTACTACTCTGGCAACCCAGGCCCTGAGTCCAAGATCTGCCCTTTCTGGGTGATGCCTCCCCC
TGAGCAAAGGCCCAGTGACTATGGAATCCCCATGGACGTAGAGATGGCGTATGTCCAAGATAGCTTCTTG
ACCAACGATGTTCTTCAGGAGATGGTGATGCTGGCTGAGTTCTACAAGGGTGCCCCTGACCTGGTGAAGT
TCCAAGAGGCCTGGAGCCCAGAGCATACCTACCTGGACAAACTCAAGATGTCCTTGGCCAGCAGGACCCC
GAAGGACCAGGGCATGTGCCACGTGCTGGAGCAGGTCTGCAGTGTGCTCAAGCAGGGGAGCTGA

Translation (487 aa):
MAAPESLSPGATAEEAPEEDEDDAEAEDPERGTGSGGRSGSLGGSGGGTAGPGMALGGALTRRAVTLRVL
LKDELLEPGEGVLSIYYLGRKFTGDLQLDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKY
KGQKLDKYKAAWLRRHQLHMPVATADESPTSEGEEEELLLEEEEEDVLAGVSSEDKGHRPPGKGSLEPEA
TPPGKRMDKVPVPIRYCMLGSRDSARNPHTLVEVTSFAAINKFQPFNVAVSSNVLFLLDFHCHLTRSEVV
GYLGGRWDINNQMLTVLRAFPCRSRLGDTDTAATVEEEIYQVLFLRGLSLVGWYHSHPHSPAVPSLQDID
AQMEYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKICPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFL
TNDVLQEMVMLAEFYKGAPDLVKFQEAWSPEHTYLDKLKMSLASRTPKDQGMCHVLEQVCSVLKQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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