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Report for CCDS28411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28411.1 Public Mus musculus 17 Psmb1 23 108 98 CCDS HistoryNCBI Gene:19170Re-query CCDS DB by CCDS ID:28411.1Re-query CCDS DB by GeneID:19170See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014913.10 ENSMUSP00000014913.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014913.10Link to Ensembl Protein Viewer:ENSMUSP00000014913.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014913Re-query CCDS DB by Protein ID:ENSMUSP00000014913
Original member Current member NCBI NM_011185.3 NP_035315.1 Accepted alive Link to Nucleotide Sequence:NM_011185.3Link to Protein Sequence:NP_035315.1Re-query CCDS DB by Nucleotide ID:NM_011185Re-query CCDS DB by Protein ID:NP_035315Link to BLAST:NP_035315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035315.1 240 O09061 240 100% 0 0

Chromosomal Locations for CCDS 28411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15476020 15476205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15477315 15477421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15490156 15490285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15493098 15493179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15494416 15494523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15498153 15498262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGCTTTCCACTGCTGCTTACCGAGACGTGGAACGAGAGCTGGGAATGGGGCCTCACGGCTCCGCCGGCC
CTGTGCAGCTGCGGTTTTCGCCTTATGCCTTCAACGGAGGTACTGTATTGGCAATTGCTGGAGAAGATTT
TTCCATCGTCGCTTCAGACACTCGATTGAGTGAAGGATTTTCAATTCATACCCGAGATAGCCCCAAATGC
TACAAACTGACAGACAAGACAGTAATTGGCTGCAGTGGTTTCCATGGAGATTGTCTCACTTTGACAAAGA
TTATTGAAGCAAGATTAAAGATGTACAAGCATTCCAATAACAAGGCCATGACAACGGGGGCGATTGCTGC
AATGCTGTCTACCATCCTGTACTCACGGCGCTTCTTCCCTTACTATGTTTACAACATCATTGGAGGACTT
GATGAAGAAGGAAAGGGAGCTGTGTACAGCTTTGACCCAGTGGGCTCTTACCAGAGAGACTCTTTCAAGG
CGGGAGGCTCAGCAAGTGCCATGCTGCAGCCTCTGCTCGACAACCAGGTTGGCTTCAAAAATATGCAGAA
TGTAGAGCACGTCCCCCTGACGCTGGACAGAGCCATGAGGCTGGTGAAAGATGTCTTCATTTCTGCAGCC
GAGAGGGATGTGTATACTGGAGATGCTCTCAGGATCTGCATCGTGACCAAAGAGGGCATCAGGGAGGAAA
CTGTTCCCCTGCGGAAAGACTGA

Translation (240 aa):
MLSTAAYRDVERELGMGPHGSAGPVQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKC
YKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGL
DEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA
ERDVYTGDALRICIVTKEGIREETVPLRKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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