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Report for CCDS35958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35958.1 Public Mus musculus 10 Pwp2 23 108 98 CCDS HistoryNCBI Gene:110816Re-query CCDS DB by CCDS ID:35958.1Re-query CCDS DB by GeneID:110816See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042556.10 ENSMUSP00000045812.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042556.10Link to Ensembl Protein Viewer:ENSMUSP00000045812.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042556Re-query CCDS DB by Protein ID:ENSMUSP00000045812
Original member Current member NCBI NM_029546.2 NP_083822.1 Accepted alive Link to Nucleotide Sequence:NM_029546.2Link to Protein Sequence:NP_083822.1Re-query CCDS DB by Nucleotide ID:NM_029546Re-query CCDS DB by Protein ID:NP_083822Link to BLAST:NP_083822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083822.1 919 Q8BU03 919 100% 0 0

Chromosomal Locations for CCDS 35958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78171960 78172134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78173381 78173455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78173573 78173723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78173833 78174051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78174931 78174996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78175486 78175594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78176253 78176400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78176956 78177136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78177750 78177900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78178166 78178313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78178428 78178576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78178961 78179097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78179715 78179785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78180126 78180269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78181049 78181278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78181511 78181646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78182386 78182529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78182623 78182722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78182946 78183040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78184058 78184170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78185071 78185088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGAAATTCGCTTACCGGTTCTCGAATTTGTTGGGTACGGTTTATCGGTGTGGAAACTTAAATTTCACAC
ATGATGGAAATTCTGTTATCAGCCCCGTGGGAAATAGAGTCACTGTGTTTGACCTTAAGAACAACAGATC
CAACACATTGCCTCTGGCCACCAAATACAACATCAAGTGCGTGGGGCTGTCCCCAGATGGTCGCCTCGCA
ATCATCGTTGATGAAGGGGGTGCTGCTCTGCTGGTCAGCTTGGTGTGCAGGTCGGTGCTCCACCACTTCC
ACTTCAAGGGCTCCGTGCACAGCGTCTCCTTCTCTCCCGATGGCAGAAAATTCGTTGTCACAAAGGGCAA
CATTGCGCAAATGTACCACGCCCCCGGAAAGAAGCGAGAGTTCAATGCGTTTGTTCTGGACAAAACCTAT
TTCGGGCCCTATGATGAGACCACATGCATCGACTGGACAGATGACTCCAAGTGCTTTGTGGTTGGAAGCA
AAGACATGTCCACCTGGGTGTTTGGAGCTGAGCGCTGGGACAACCTCATCTACTATGCACTGAGTGGACA
CAAGGATGCCATTGTGGCCTGCTTCTTCGAGTCCAACAGCCTAGATCTATACTCGCTCAGTCAAGATGGA
GCCCTGTGTGTGTGGCAGTGTGACACACCCCCTGAGGGCCTGCGGCTTAAGGCACCCAGGGGCTGGAAGG
CAGACATACTTCAGAGGGAGAAGGAAGAAGAGGAGGAGGATGAGGAGGAGGGGGATCGAGAAACCACCAT
CCGAGGGAAGACCACACCAGCGGAGCAGGAGAGGGTCGGGAAAGTGAAATACTCCCGACTGGCCAAGTAC
TTCTTGAACAAAGAAGGAGACTTTAACAACCTGACATCCGCGGCGTATCATAAGAAGACCCATCTCTTGG
TCACGGGTTTTGCTTCTGGAATCTTCCATCTGCACGAGCTCCCAGAGTTCAACCTGATCCACTCCCTGAG
CATCTCCGATCAGAGGGTTGCTTCGGTTGCCATCAACAGCTCTGGGGACTGGATTGCCTTTGGCTGCTCA
GGCATGGGCCAGCTGCTTGTGTGGGAATGGCAGAGTGAATCCTATGTGCTCAAGCAGCAGGGCCATTTCA
ACAGCATGGTGGCCCTGGCCTACTCCCCTGACGGGCAGTACATTGTCACCGGTGGGGACGATGGCAAGGT
TAAGGTGTGGAACACCCTCAGTGGCTTCTGCTTTGTCACTCTCACGGAGCACTCCAGTGGGGTCACTGGA
GTGACATTCACCACCACGGGCCATGTCATCGTCACCTCCTCCTTGGATGGCACTGTGAGAGCCTTCGATC
TTCACAGGTACCGGAATTTCCGCACCTTCACGTCTCCACGCCCCACACAGTTCTCCTGTGTGGCTGTCGA
CTCGAGTGGGGAAATCGTCTCTGCAGGGGCGCAGGACTCCTTTGAGATCTTTGTGTGGTCCATGCAGACA
GGCAGGCTTCTTGATGTTCTGTCTGGCCATGAGGGACCCGTCAGTGGTCTTTGCTTTAACCCAATGAAGT
CTATCCTGGCTAGTGCCTCTTGGGACAAGACAGTGCGTCTGTGGGACATGTTCGACAGTTGGAGAACCAA
AGAGACCTTGACTCTGACCTCTGACGCCCTAGCTGTGACTTTCCGGCCTGATGGTGCAGAGCTGGCTGTG
GCCACGCTGAATTCACAGATCACGTTTTGGGACCCTGAGAATGCTGTACAGGTGGGCTCCATCGAGGGCA
GGCATGACCTGAAGACCGGCAGGAAGGAGCTGGACAAGATCACAGCCAAACATTCAGCCAAGGGCAAGGC
CTTCACTACCCTGTGTTACTCTGCGGACGGGCAGAGCATCCTGGCGGGAGGCATGTCCAAGTTCGTGTGC
CTTTACCACGTCCGGGAGCAAATCCTGGTGAAGAGGTTTGAGCTCTCCTGCAACCTGTCTCTGGATGCCA
TGGAGGAATTCCTGAACCGGAGAAAGATGACAGAGTTTGGCAACCTGGCACTCATTGATCAAGATGCTGG
GGAGGAGAATGGGGTGGCAGTTCCACTGCCAGGAGTAAGGAAAGGTGATATGAGCTCCAGACACTTCAAA
CCTGAAATCAGGGTGACTTCTCTGCGCTTCTCTCCCACGGGGCGCTGCTGGGCGGCCACCAGCACAGAGG
GCCTCCTCATCTTCTCCCTGGATGCCCAGATGCTCTTCGACCCATTTGAGCTGGACACCAGTGTGACCCC
TGGACGGATCCGGGAGGCGCTCCGACAGAGGGAGTTTACCCGGGCCATCCTCATGGCCTTCCGCCTCAAT
GAGAAAAAACTGGCCCAGGAGGCCCTGGAGGCTGTGCCACAGAATGAAATTGAGGTAGTCAGCACGTCCC
TGCCTGAGCTGTACGTAGTGAAAGTACTGGAGTTCTTAGCTGCCTCCTTTGAAGAATCTAGGCACCTGGA
ATTCTACCTTATATGGACTCAGAAGTTACTTATGTCACATGGACAGCGGCTGAAGTCCAGGGCGGGACAG
TTGCTGCCTGTGGTCCAGTTCCTTCAGAAGGGCCTCCAGCGGCATCTGGATGATGTTTCCAAACTCTGTG
ACTGGAACCGCTTCAACATCCAGTACGTGCTGGCAGTTTCCAAGCAGCGGGGCATGAAACGCACCCTGGA
ACCTGTGGACACAGAAGAGGACTCAGATGCATCTGATGAGGACAGTCTGCACCTACTCAGAGCTGCAGGT
GAAGAAGAGGAAGAGGAGATGCTGATATAG

Translation (919 aa):
MKFAYRFSNLLGTVYRCGNLNFTHDGNSVISPVGNRVTVFDLKNNRSNTLPLATKYNIKCVGLSPDGRLA
IIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTY
FGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALSGHKDAIVACFFESNSLDLYSLSQDG
ALCVWQCDTPPEGLRLKAPRGWKADILQREKEEEEEDEEEGDRETTIRGKTTPAEQERVGKVKYSRLAKY
FLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCS
GMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTG
VTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQT
GRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAV
ATLNSQITFWDPENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVC
LYHVREQILVKRFELSCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGEENGVAVPLPGVRKGDMSSRHFK
PEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLN
EKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLAASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQ
LLPVVQFLQKGLQRHLDDVSKLCDWNRFNIQYVLAVSKQRGMKRTLEPVDTEEDSDASDEDSLHLLRAAG
EEEEEEMLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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