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Report for CCDS23622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23622.1 Public Mus musculus 9 Slc25a38 23 108 98 CCDS HistoryNCBI Gene:208638Re-query CCDS DB by CCDS ID:23622.1Re-query CCDS DB by GeneID:208638See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035106.11 ENSMUSP00000035106.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035106.11Link to Ensembl Protein Viewer:ENSMUSP00000035106.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035106Re-query CCDS DB by Protein ID:ENSMUSP00000035106
Original member Current member NCBI NM_144793.2 NP_659042.1 Accepted alive Link to Nucleotide Sequence:NM_144793.2Link to Protein Sequence:NP_659042.1Re-query CCDS DB by Nucleotide ID:NM_144793Re-query CCDS DB by Protein ID:NP_659042Link to BLAST:NP_659042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659042.1 326 Q91XD8 326 100% 0 0

Chromosomal Locations for CCDS 23622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120110444 120110572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120116502 120116623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120117453 120117537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120120257 120120436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120120673 120120847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120122094 120122260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120123642 120123764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGGCGTGAGCGCGGAGCCCCGGAGCCTCTCAGTCGCCGGGGCCGGGCTCGCGTCCCCAGTGATCGAGA
AGGCACGCTCGGCGCTGCTGCAGTCGCAGGATGTAGAGGACACGGTGGAGACGCTCATGTTACACCCAGT
GATTAAGGCTTTCCTCTGCGGCTCCATCAGCGGGACCTGTTCCACGCTCCTCTTCCAGCCTTTGGATCTC
CTCAAAACCCGTCTGCAGGCCCTGCAGCCCTCAGACCTAGGGCCCAGACGTGTTGGGATGTTGGCTGTGT
TCTTGAAGGTGGTTCGCACAGAAAGTCTCCTGGGCCTTTGGAAAGGGATGTCTCCTTCCATTGTGAGATG
TGTCCCTGGAGTGGGGATCTACTTTGGCACCCTGTATTCTTCGAAGCAGTATTTCTTGCGAGGCCATCCT
CCCACCGCCCTGGAGTCGGTCATCCTGGGCATGGGCTCCCGCTCTGTGGCAGGAGTCTGCATGTCACCCA
TCACAGTGATCAAGACACGCTATGAGAGTGGGACTTACAGCTATGAGAGCATCTATGCAGCCCTGAGGAG
CATCTACTGCAGCGAGGGCCACCGTGGCCTCTTCAGGGGCCTGACAGCAACTCTCCTCCGTGATGCCCCC
TTCTCAGGGCTCTACCTGATGTTTTACAGTCAGACCAGGACCGCAGTGCTGCACGGCACAGCCCAGCTGG
ATGCTGCTCTGATACCCCTTATTAATTTCTCCTGTGGGATATTTGCTGGCGTTCTGGCTTCACTGGTGAC
TCAACCTGCAGACGTGATCAAAACTCACATGCAGCTCTCCCCAGTGAAGTTTCAGTGGATTGGCCAAGCA
GCCACTCTCATCTTCAAGAACCATGGGCTGCGTGGCTTCTTTCATGGCAGTGTTCCCCGAGCCCTCCGAA
GAACGCTGATGGCTGCCATGGCGTGGACCGTCTATGAAGAGATGATGGCCAGGATGGGCCTGAAGTCCTG
A

Translation (326 aa):
MGVSAEPRSLSVAGAGLASPVIEKARSALLQSQDVEDTVETLMLHPVIKAFLCGSISGTCSTLLFQPLDL
LKTRLQALQPSDLGPRRVGMLAVFLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGHP
PTALESVILGMGSRSVAGVCMSPITVIKTRYESGTYSYESIYAALRSIYCSEGHRGLFRGLTATLLRDAP
FSGLYLMFYSQTRTAVLHGTAQLDAALIPLINFSCGIFAGVLASLVTQPADVIKTHMQLSPVKFQWIGQA
ATLIFKNHGLRGFFHGSVPRALRRTLMAAMAWTVYEEMMARMGLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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