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Report for CCDS25869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25869.1 Public Mus musculus 12 Prkar2b 23 108 98 CCDS HistoryNCBI Gene:19088Re-query CCDS DB by CCDS ID:25869.1Re-query CCDS DB by GeneID:19088See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003079.11 ENSMUSP00000003079.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003079.11Link to Ensembl Protein Viewer:ENSMUSP00000003079.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003079Re-query CCDS DB by Protein ID:ENSMUSP00000003079
Original member Current member EBI ENSMUST00000036497.15 ENSMUSP00000039797.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036497.15Link to Ensembl Protein Viewer:ENSMUSP00000039797.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000036497Re-query CCDS DB by Protein ID:ENSMUSP00000039797
Original member Current member NCBI NM_001364407.1 NP_001351336.1 Accepted alive Link to Nucleotide Sequence:NM_001364407.1Link to Protein Sequence:NP_001351336.1Re-query CCDS DB by Nucleotide ID:NM_001364407Re-query CCDS DB by Protein ID:NP_001351336Link to BLAST:NP_001351336.1
Original member Current member NCBI NM_011158.4 NP_035288.2 Accepted alive Link to Nucleotide Sequence:NM_011158.4Link to Protein Sequence:NP_035288.2Re-query CCDS DB by Nucleotide ID:NM_011158Re-query CCDS DB by Protein ID:NP_035288Link to BLAST:NP_035288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351336.1 416 P31324 416 100% 0 0
NP_035288.2 416 P31324 416 100% 0 0

Chromosomal Locations for CCDS 25869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31960389 31960522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31962999 31963137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31963898 31963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31965115 31965189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31967213 31967314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31972050 31972203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31975919 31976025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31987880 31987963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31993731 31993783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32038622 32038657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32060782 32061082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAGCATCGAGATCCCCGCGGGGCTCACGGAGCTGCTGCAGGGCTTCACGGTGGAGGTGCTGAGGCACC
AGCCCGCCGACCTGCTGGAGTTCGCGCTGCAGCACTTCACGCGGCTGCAGCAGGAGAACGAGCGCAAGGG
CGCCGCGCGCTTCGGCCATGAGGGCAGGACCTGGGGGGACGCGGGCGCAGCCGCCGGGGGCGGCATCCCC
AGTAAGGGTGTCAACTTCGCCGAGGAGCCCATGCGCTCCGACTCCGAGAACGGCGAGGAGGAGGAGGCCG
CGGAAGCAGGGGCGTTCAACGCTCCAGTTATAAACCGGTTCACAAGGCGTGCCTCGGTCTGTGCAGAAGC
TTATAATCCTGATGAAGAGGAAGACGATGCAGAGTCCAGGATAATACATCCCAAAACCGATGATCAGAGA
AACAGATTGCAAGAGGCTTGCAAAGACATCCTGCTGTTTAAGAACCTGGATCCAGAGCAGATGTCCCAAG
TTTTAGATGCCATGTTTGAAAAATTGGTCAAAGAAGGGGAACACGTAATTGACCAAGGTGATGACGGTGA
CAACTTTTACGTCATTGACAGAGGAACATTTGATATTTATGTAAAATGTGATGGCGTTGGAAGATGCGTC
GGTAACTATGATAACCGTGGGAGTTTTGGAGAACTGGCCTTAATGTACAATACACCCAGAGCAGCTACAA
TCACTGCTACCTCTCCTGGTGCTCTGTGGGGTTTGGACAGGGTGACCTTCAGGAGAATAATTGTAAAAAA
CAATGCCAAAAAGAGGAAGATGTACGAGAGCTTTATCGAGTCCCTGCCGTTCCTCAAGTCTCTAGAGGTT
TCTGAACGCCTGAAGGTGGTGGATGTGATTGGCACCAAAGTTTACAATGATGGAGAGCAGATCATTGCTC
AGGGAGATTTGGCAGACTCTTTCTTCATTGTAGAATCTGGAGAAGTGAAAATTACTATGAAAAGAAAGGG
TAAATCAGAAGTTGAAGAGAACGGAGCTGTGGAAATCGCTCGGTGCTTTCGGGGCCAGTACTTTGGAGAG
CTTGCCCTGGTCACTAACAAACCAAGAGCAGCGTCTGCACACGCCATCGGGACTGTCAAATGCTTAGCCA
TGGATGTGCAAGCATTTGAAAGGCTTTTGGGACCTTGCATGGAAATTATGAAGAGGAACATCGCCACCTA
TGAAGAACAATTAGTTGCGCTGTTTGGAACAAACATGGATATTGTTGAGCCCACTGCATGA

Translation (416 aa):
MSIEIPAGLTELLQGFTVEVLRHQPADLLEFALQHFTRLQQENERKGAARFGHEGRTWGDAGAAAGGGIP
SKGVNFAEEPMRSDSENGEEEEAAEAGAFNAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQR
NRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV
GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEV
SERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGE
LALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNMDIVEPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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