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Report for CCDS39887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39887.1 Public Mus musculus 7 Cox6b1 23 108 98 CCDS HistoryNCBI Gene:110323Re-query CCDS DB by CCDS ID:39887.1Re-query CCDS DB by GeneID:110323See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075738.5 ENSMUSP00000075150.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075738.5Link to Ensembl Protein Viewer:ENSMUSP00000075150.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075738Re-query CCDS DB by Protein ID:ENSMUSP00000075150
Original member Current member NCBI NM_025628.3 NP_079904.1 Accepted alive Link to Nucleotide Sequence:NM_025628.3Link to Protein Sequence:NP_079904.1Re-query CCDS DB by Nucleotide ID:NM_025628Re-query CCDS DB by Protein ID:NP_079904Link to BLAST:NP_079904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079904.1 86 P56391 86 100% 0 0

Chromosomal Locations for CCDS 39887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30617109 30617162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30623415 30623515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30624500 30624605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGCTGAAGACATCAAGACTAAAATCAAGAACTACAAAACTGCCCCCTTTGACAGCCGCTTCCCCAACC
AGAACCAGACTAAGAACTGTTGGCAGAACTACCTGGACTTCCACCGCTGTGAGAAGGCAATGACGGCCAA
GGGGGGTGATGTCTCCGTGTGTGAGTGGTACCGGCGTGTGTACAAGTCCCTCTGTCCCGTGTCATGGGTC
TCAGCCTGGGATGACCGCATAGCTGAAGGCACATTTCCTGGGAAGATCTGA

Translation (86 aa):
MAEDIKTKIKNYKTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWV
SAWDDRIAEGTFPGKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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