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Report for CCDS89474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89474.1 Public Mus musculus 2 Slc25a25 23 108 98 CCDS HistoryNCBI Gene:227731Re-query CCDS DB by CCDS ID:89474.1Re-query CCDS DB by GeneID:227731See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89474.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113308.7 ENSMUSP00000108933.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113308.7Link to Ensembl Protein Viewer:ENSMUSP00000108933.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113308Re-query CCDS DB by Protein ID:ENSMUSP00000108933
Original member Current member NCBI NM_001362905.1 NP_001349834.1 Accepted alive Link to Nucleotide Sequence:NM_001362905.1Link to Protein Sequence:NP_001349834.1Re-query CCDS DB by Nucleotide ID:NM_001362905Re-query CCDS DB by Protein ID:NP_001349834Link to BLAST:NP_001349834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349834.1 489 A2ASZ8-4 489 100% 0 0

Chromosomal Locations for CCDS 89474.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32416138 32416322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32416409 32416559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417092 32417259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417346 32417453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417724 32417876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32419048 32419206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32420305 32420416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421303 32421390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421473 32421599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32430529 32430747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGCTACAGACACTGTGGCACTTTCTGTCTAGCTTTCTCCCTAGAGCTGAGTGCCAGGACTCCAGAGAGG
GCATCGACCATGGAGTCAGAGGTACTCAGGCCCCTGCTCGGGGAGACCAGATGTCCACCTTTTTGGGGAA
ACAAAACGGAAGGGCTGAGGCCACGGAAAAGAGACCCACCATCTTGCTGGTGGTCGGACCTGCAGAACAG
TTTCCTAAGAAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAAGAGTTTGTAC
ATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGAATGATGGTCG
AATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACAGCAGGCGGAG
AAGATTCTTAAGAGCATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGGGACTACCACC
TCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACGATCTTCGATGTCGG
TGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTG
GTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCA
TGCAGGTCCATGCCTCCCGCAGCAACAACATGTGCATCGTAGGTGGATTCACACAGATGATTCGAGAAGG
GGGAGCCAAGTCACTCTGGCGGGGCAACGGCATCAATGTCCTCAAAATTGCCCCTGAGTCGGCCATCAAA
TTCATGGCATATGAGCAGATGAAACGGCTTGTCGGTAGTGATCAGGAGACGCTGAGGATCCACGAAAGGC
TTGTGGCAGGCTCCTTGGCCGGAGCCATTGCCCAGAGTAGCATCTACCCAATGGAGGTTCTGAAGACCCG
AATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTTGGCTAAAGAG
GGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCTGGCATCGACC
TAGCTGTCTATGAGACATTGAAAAATACCTGGCTCCAGCGCTACGCAGTAAACAGTGCAGACCCCGGTGT
GTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGTACTTGTGGCCAGCTGGCCAGCTACCCACTAGCCCTG
GTCAGGACCCGGATGCAGGCACAAGCCTCCATTGAGGGCGCACCTGAGGTAACCATGAGCAGCCTCTTCA
AACAGATTCTGCGGACTGAGGGGGCCTTTGGGCTCTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGAT
CCCGGCTGTGAGCATCAGCTACGTGGTCTACGAAAACCTGAAGATCACCCTGGGCGTGCAGTCTCGGTGA

Translation (489 aa):
MLQTLWHFLSSFLPRAECQDSREGIDHGVRGTQAPARGDQMSTFLGKQNGRAEATEKRPTILLVVGPAEQ
FPKKIVQAGDKDLDGQLDFEEFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAE
KILKSMDKNGTMTIDWNEWRDYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHL
VAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIK
FMAYEQMKRLVGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAKE
GVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLAL
VRTRMQAQASIEGAPEVTMSSLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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