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Report for CCDS26746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26746.1 Public Mus musculus 13 Sgtb 23 108 98 CCDS HistoryNCBI Gene:218544Re-query CCDS DB by CCDS ID:26746.1Re-query CCDS DB by GeneID:218544See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044385.13 ENSMUSP00000041307.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044385.13Link to Ensembl Protein Viewer:ENSMUSP00000041307.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044385Re-query CCDS DB by Protein ID:ENSMUSP00000041307
Original member Current member NCBI NM_001361054.1 NP_001347983.1 Accepted alive Link to Nucleotide Sequence:NM_001361054.1Link to Protein Sequence:NP_001347983.1Re-query CCDS DB by Nucleotide ID:NM_001361054Re-query CCDS DB by Protein ID:NP_001347983Link to BLAST:NP_001347983.1
Original member Current member NCBI NM_144838.2 NP_659087.1 Accepted alive Link to Nucleotide Sequence:NM_144838.2Link to Protein Sequence:NP_659087.1Re-query CCDS DB by Nucleotide ID:NM_144838Re-query CCDS DB by Protein ID:NP_659087Link to BLAST:NP_659087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347983.1 304 Q8VD33 304 100% 0 0
NP_659087.1 304 Q8VD33 304 100% 0 0

Chromosomal Locations for CCDS 26746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104111090 104111189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104118324 104118427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104121467 104121536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104124190 104124289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104129229 104129333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104131937 104132075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104132166 104132228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104134604 104134641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104134840 104134923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104139740 104139851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTCATCTGTGAAGCCCCTAGTTTATGCAGTTATTCGTTTCTTGCGGGAACAAAGTCAGATGGATGCAT
ATACTTCTGATGAACAAGAAAGTTTGGAAGTTGCCATCCAGTGTTTGGAGACCGTTTTTAAGATCAGTCC
AGAAGACACACATCTGGCAGTTTCACAGCCTTTGACAGAAATGTTCACAAACTCCGTCTGTAAGAATGAC
ATACGGCCGCTTTCAAACTCAGTGCCCGAGGATGTGGGAAAGGCGGACCAGCTGAAGGATGAAGGCAATA
ACCACATGAAAGAAGAAAATTACGCTGCGGCAGTGGACTGCTACACGCAGGCAATAGAACTGGATCCCAA
CAATGCCGTTTATTATTGCAACAGGGCTGCTGCTCAAAGCAAATTAAGTCACTACACAGACGCAATCAAG
GACTGCGAGAAAGCCATTGCAATTGACTCGAAATACAGCAAGGCCTACGGAAGGATGGGGCTCGCCCTCA
CTGCCATGAATAAGTTTGAAGAGGCCGTTACAAGCTACCAGAAGGCACTGGATCTCGATCCTGAGAATGA
TTCGTATAAGTCAAATCTGAAAATAGCAGAACAGAAGTTGAGAGAGGTGTCTAGCCCTACGGGAACCGGG
CTGAGCTTTGACATGGCTAGCTTGATAAATAACCCGGCCTTCATCACCATGGCTGCAAGTTTAATGCAGA
ACCCTCAAGTTCAGCAGCTAATGTCAGGGATGATGACAAATGCCATTGGAGGACCAGCTGCCGGAGTTGG
AGGCCTAACAGACCTGTCTAGCCTAATCCAAGCGGGGCAGCAGTTTGCGCAGCAGATACAACAGCAGAAT
CCGGAACTCATAGAGCAGCTGAGAAACCACATCCGGAGCAGATCGTTCAGCAGCAGTGCAGACGAACACT
CCTGA

Translation (304 aa):
MSSVKPLVYAVIRFLREQSQMDAYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTNSVCKND
IRPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIK
DCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTG
LSFDMASLINNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQN
PELIEQLRNHIRSRSFSSSADEHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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