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Report for CCDS38149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38149.1 Public Mus musculus 2 Hoxd3 23 108 98 CCDS HistoryNCBI Gene:15434Re-query CCDS DB by CCDS ID:38149.1Re-query CCDS DB by GeneID:15434See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047830.7 ENSMUSP00000044809.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047830.7Link to Ensembl Protein Viewer:ENSMUSP00000044809.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047830Re-query CCDS DB by Protein ID:ENSMUSP00000044809
Original member Current member EBI ENSMUST00000111982.7 ENSMUSP00000107613.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111982.7Link to Ensembl Protein Viewer:ENSMUSP00000107613.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111982Re-query CCDS DB by Protein ID:ENSMUSP00000107613
Original member Current member EBI ENSMUST00000111983.8 ENSMUSP00000107614.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111983.8Link to Ensembl Protein Viewer:ENSMUSP00000107614.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111983Re-query CCDS DB by Protein ID:ENSMUSP00000107614
Original member Current member NCBI NM_010468.2 NP_034598.2 Accepted alive Link to Nucleotide Sequence:NM_010468.2Link to Protein Sequence:NP_034598.2Re-query CCDS DB by Nucleotide ID:NM_010468Re-query CCDS DB by Protein ID:NP_034598Link to BLAST:NP_034598.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034598.2 433 P09027 433 100% 0 0

Chromosomal Locations for CCDS 38149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74744012 74744555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74746322 74747079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGTTATTTGAGCAGGGTCAGCTGACCCTGGAACTTCCTGAGTGCACCATGCAGAAGGCTGCATACTACG
AGAACCCAGGACTCTTTGGAGGCTACGGATATAGCAAAGCCACTGACACATATGGCTACAGCACTCCTCA
TCAGCCTTACCCACCCCCTGCTGCTGCCAACTCCCTGGACAGTGATTACCCAAGTTCTGCCTGCTCCATC
CAGAGCTCTGCACCTCTCCGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGTAGCTGTATGAGACCTG
GCACTGGGAATAGCCAGGGTGGAGGTGGTGGCAACCAACCCCCTGGTCTGAACTCAGAGCAGCAGCCACC
ACAACCTCCTCCTCCACCACCACCCACCTTGCCCCCATCTTCACCTACCAATCCTGGAAGTGGAGTGCCT
GCCAAGAAGACCAAGGGTGGACTCAGTGCTTCTAGCTCTTCATCCACCATCAGCAAACAGATCTTCCCCT
GGATGAAAGAATCCCGACAGAACTCCAAGCAGAAGAACAGCTGTGCCACTTCAGGAGAGAACTGTGAGGA
CAAGAGCCCACCCGGCCCAGCATCCAAGAGGGTGCGCACGGCGTACACGAGTGCTCAGCTGGTGGAGCTG
GAGAAGGAGTTCCACTTCAACCGCTATCTGTGCCGGCCGCGCCGCGTGGAGATGGCCAACCTGCTGAACC
TCACCGAACGCCAGATCAAGATCTGGTTCCAGAACCGTCGCATGAAGTACAAGAAGGACCAGAAGGCTAA
GGGCATCCTGCATTCTCCAGCCGGTCAGTCCCCGGAGCGCAGCCCACCTCTTGGAGGAGCGGCGGGCCAC
GTGGCTTACTCCGGCCAGCTGCCGCCGGTGCCCGGCCTGGCCTACGACGCACCCTCGCCGCCCGCTTTCG
CCAAATCGCAGCCCAATATGTACGGCCTGGCCGCCTACACGGCGCCGCTCAGCAGCTGCCTGCCTCAGCA
GAAGCGGTACCCGGCGCCCGAGTTCGAGCCTCACCCCATGGCGAGCAACGGCGGCGGCTTCGCCAGCGCC
AACCTGCAGGGCAGCCCGGTGTACGTGGGCGGCAACTTCGTCGACTCCATGGCGCCCACGTCCGGGCCGG
TCTTCAATCTGGGCCACCTCTCGCACCCGTCTTCGGCCAGCGTGGACTACAGTTGCGCCGCGCAAATCCC
TGGCAACCATCACCACGGACCCTGCGACCCTCATCCCACCTACACAGATCTCTCGGCTCACCACTCGTCT
CAGGGACGCCTGCCCGAGGCCCCCAAACTGACACATCTGTAG

Translation (433 aa):
MLFEQGQLTLELPECTMQKAAYYENPGLFGGYGYSKATDTYGYSTPHQPYPPPAAANSLDSDYPSSACSI
QSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQQPPQPPPPPPPTLPPSSPTNPGSGVP
AKKTKGGLSASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVEL
EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGH
VAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYPAPEFEPHPMASNGGGFASA
NLQGSPVYVGGNFVDSMAPTSGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSS
QGRLPEAPKLTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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