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Report for CCDS29969.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29969.2 Public Mus musculus X Gpkow 23 108 98 CCDS HistoryNCBI Gene:209416Re-query CCDS DB by CCDS ID:29969.2Re-query CCDS DB by GeneID:209416See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 29969.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29969.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049896.12 ENSMUSP00000076178.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049896.12Link to Ensembl Protein Viewer:ENSMUSP00000076178.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049896Re-query CCDS DB by Protein ID:ENSMUSP00000076178
Original member Current member NCBI NM_173747.3 NP_776108.2 Accepted alive Link to Nucleotide Sequence:NM_173747.3Link to Protein Sequence:NP_776108.2Re-query CCDS DB by Nucleotide ID:NM_173747Re-query CCDS DB by Protein ID:NP_776108Link to BLAST:NP_776108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776108.2 488 Q56A08 488 100% 0 0

Chromosomal Locations for CCDS 29969.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7697226 7697395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7698493 7698653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7698756 7698880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7702063 7702172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7703370 7703583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7705300 7705432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7706011 7706149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7706328 7706451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7706692 7706761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7707936 7708021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7708111 7708245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCGGGCCGTGAGAGTCCGCCGCCGTCTGCCCCGTCAATGGCTCCAATTTCTTTCGGGTTCACTCGCA
CGTCTGTCCGGAGGCGACTGGCAGACCTCGGAGATAGCGAAAGACAGGCCCCAGAGGAGAAAGATTTCTT
GGCGACCGTGGAAGGGAGGAAGCTGCAGAGTGTGAACCCTCCAGAAGCCCCCAAGGAGCTGGTTATCCCG
TTGATCCAGAATGGCTCTCGCAGGCAACCTCTGTCCAAGAACCCTAAGCCATCCTCAGAAACTAGCACCG
TGTTGATGTCAGACGGTGTGTTGTCCCAGGCTGTGAAGGAACTCATTGAGGAATCCAAGAAGTCTCTGGA
GGAGAGGGAGAATGCAGGTGTTGACCCCACGCTCACTATCCCCATGATCCAGAAAGGATGTACTCCCATT
GAGGAAGGATCAGACAGCGAACCTCAGGCTGAGACAGTGCCGGAGGAAGCCGACTATGAGGCAGTCCCTG
TGGAGGCCTATGGGCTGGCCATGTTGCGGGGCATGGGATGGAAACCTGGCAAGGGCATCGGCAATACCTT
CAGTCAGGTAGTGAAGCCCCGAGTCAACTCTATAAGGCCGAAGGGCTTAGGGCTAGGTGCCAACCGGATG
GAGGCTCAGGACTTGGCCTCCGTAGGCTCTCACCACCCACCAAGACCAGATGGGGATCGAGAGAATGATA
AGGAAGGCCAACCTCAAGGGCTGATGCATGGAAGAGCTGTGGTTGTCCTTTCTGGCCCCTACCGGGGCCT
CTATGGCAAGGTAGAAGGCCTAGATCCTGACAACGTACGGGCCATGGTTCGCTTGGCAGTGGGCAACCGC
ATTGTGACTGTTAGTGAGTATTGCCTGCGGCCTGTTTCCCAGCAGGAGTTTGATAGCCACACCTCGAAGC
CAGGCCATGTGAGCCAAACTTCCACAGAACAACAAAACAGAGCAACTGGAACAGCCTCGTCATTGAAGGC
TGCACAGAATCAGGAAGACTCAAAGAGGAGGCAAAAGGGTTCGGAGAAGAAGCGGAAACACTCTCCCGAC
CGACAGGATGGACCTGTGCCCAAGACTGAGAAAGCAGCCCCTAGAAACAAGCACTGGTTGCACAGGGACC
TACGTGTGCGGTTCATTGACAAACTACACAAGAGTGGCCGCTATTATAACACCAAGATGACAATTGAAGA
TGTCCTGAGCCCAGACACATGTGTGTGTCGGACGGATGAAGGCCGAGTTCTGGAAGATGTGAGAGAAGAT
ATGCTGGAGACCCTGATTCCCAAGGGAGAAGGCCACCGTGTGATGGTGGTGCTCGGACCACATGCTGGAA
AGGTGGGACTTCTTAGGAGTCGGGACAGAGCGCAGAGTCATGCTTTGGTCCAACTTAGGAGAGAGAACCA
GGTGGTGGAGCTCCACTATAACGCCATCTGCCAGTACATGGGCCCCGGTGACTCAGATGAAGACTGA

Translation (488 aa):
MAGRESPPPSAPSMAPISFGFTRTSVRRRLADLGDSERQAPEEKDFLATVEGRKLQSVNPPEAPKELVIP
LIQNGSRRQPLSKNPKPSSETSTVLMSDGVLSQAVKELIEESKKSLEERENAGVDPTLTIPMIQKGCTPI
EEGSDSEPQAETVPEEADYEAVPVEAYGLAMLRGMGWKPGKGIGNTFSQVVKPRVNSIRPKGLGLGANRM
EAQDLASVGSHHPPRPDGDRENDKEGQPQGLMHGRAVVVLSGPYRGLYGKVEGLDPDNVRAMVRLAVGNR
IVTVSEYCLRPVSQQEFDSHTSKPGHVSQTSTEQQNRATGTASSLKAAQNQEDSKRRQKGSEKKRKHSPD
RQDGPVPKTEKAAPRNKHWLHRDLRVRFIDKLHKSGRYYNTKMTIEDVLSPDTCVCRTDEGRVLEDVRED
MLETLIPKGEGHRVMVVLGPHAGKVGLLRSRDRAQSHALVQLRRENQVVELHYNAICQYMGPGDSDED


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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