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Report for CCDS26712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26712.1 Public Mus musculus 13 Utp15 23 108 98 CCDS HistoryNCBI Gene:105372Re-query CCDS DB by CCDS ID:26712.1Re-query CCDS DB by GeneID:105372See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040972.3 ENSMUSP00000048204.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040972.3Link to Ensembl Protein Viewer:ENSMUSP00000048204.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040972Re-query CCDS DB by Protein ID:ENSMUSP00000048204
Original member Current member NCBI NM_178918.3 NP_849249.1 Accepted alive Link to Nucleotide Sequence:NM_178918.3Link to Protein Sequence:NP_849249.1Re-query CCDS DB by Nucleotide ID:NM_178918Re-query CCDS DB by Protein ID:NP_849249Link to BLAST:NP_849249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849249.1 528 Q8C7V3 528 100% 0 0

Chromosomal Locations for CCDS 26712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98249129 98249376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98250572 98250630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98250785 98250918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98251929 98252030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98252745 98252894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98253644 98253728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98254919 98255054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98257101 98257226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98257836 98258014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98259105 98259289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98259374 98259466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98260799 98260888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCGGCTATAAACCTGTAGCGATTCAAACATATCCTGTACTTGGTGAGAAGATCACCCAAGACACTC
TGTACTGGAACAACTATAAGACCCCTGTTCAGATTAAGGAATTTGGTGCAGTGTCCAAAGTAGACTTTTC
TCCTCAGCTTCCATATAACTATGCAGTCACAGCTTCTTCGAGAATCCACATTTATGGCCGGTACTCTCAA
GAGCCTGTAAAAACCTTTTCCCGTTTTAAGGACACAGCATATTGTGCGACTTTTCGACAGGATGGTCAGT
TGCTCGTTGCTGGCAGTGAAGATGGTGTAGTTCAACTTTTTGATATAAATGGGAGGGCTCCCCTCAGGCA
GTTTGAAGGCCACACAAAAGCAGTTCATACAGTAGATTTTACAGCTGACAATTATCATGTGGTCTCTGGA
GCTGATGACTATACTGTTAAATTATGGGATATTCCAAACTCTAAAGAAATCCTGACATTCAAAGAACATT
CTGATTACGTGAGGTGCGGCTGTGCCAGCAAACTGAACCCAGACCTTTTTGTAACAGGATCATACGATCA
TACTGTGAAGATATTCGATGCTCGGACAAATAAGAATGTTCTCTGTGTGGAGCATGGGCAGCCAGTGGAG
AGTGTCCTGCTTTTCCCCTCAGGAGGGCTTCTGGTGTCTGCAGGAGGCCGCTATGTTAAAGTCTGGGACA
TGTTAAAAGGAGGACAGCTGCTTGTGTCTTTGAAAAATCATCACAAGACTGTGACATGTTTGTGTCTGAG
CAGCTCTGGACAGAGGTTACTCTCCGGCTCACTGGATAGGAAAGTGAAAGTCTACAGCACCACCTCCTAC
AAAGTCGTCCACAGCTTTGACTACGCAGCTTCAATCTTGAGTCTGGCACTCTCTCATCAAGATGAGACGA
TAGTTGTAGGAATGACCAACGGAATACTGAGTGTTAAACACCGGAAGTCTGAAGCAAAGAAGACGTCTCT
TCCGAGGAGGAGGAGGCCTGCATATCGAACCTTTATTAAAGGAAAAAATTACTTGAAGCAACGGGATGAC
ATCATGGTCAGTAGGCCAGCAAAGAAGCACCTAGAGGGGTATGACAAGGATCTGAAAAGCTTTCGGGTCT
CACAGGCCCTCGACAGAGTCCTGGAGCCTAAATGTGTGATAAGGACCCCTGAGGTGACAGTTTCCATCAT
AAAGGAGCTGACTCGGAGAGGCGTCCTTGCCAATGCTCTTGCAGGTCGGGACGAGAAGGAGGTTACCCGG
GTCCTTAACTTTTTGATAAGGAATCTGTCTCAGCCGAGGTTCGCCCCTGTTTTGATTAATGCAGCTGAGA
TCATCATCGATATATATTTACCTGTGATTGGCCAGTCATCAGTAGTTGATAAAAAGTTTATAGTACTTCA
AGAACTTGTAGAAAAAGAAATTGATTACCAAAGAGAACTCCTAGAGACCTTGGGGATGATGGACATGCTA
TTTGCTACCATGACACGGAATGACAGCGACCCTGTGCCGGAGCATGTGCCCGCTGAACTCCCAGAGGAGA
AGACAGAGTCACCAACGCAGCCCAGCGACACGGACAAGAACTCCTAA

Translation (528 aa):
MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQLPYNYAVTASSRIHIYGRYSQ
EPVKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDINGRAPLRQFEGHTKAVHTVDFTADNYHVVSG
ADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFVTGSYDHTVKIFDARTNKNVLCVEHGQPVE
SVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSY
KVVHSFDYAASILSLALSHQDETIVVGMTNGILSVKHRKSEAKKTSLPRRRRPAYRTFIKGKNYLKQRDD
IMVSRPAKKHLEGYDKDLKSFRVSQALDRVLEPKCVIRTPEVTVSIIKELTRRGVLANALAGRDEKEVTR
VLNFLIRNLSQPRFAPVLINAAEIIIDIYLPVIGQSSVVDKKFIVLQELVEKEIDYQRELLETLGMMDML
FATMTRNDSDPVPEHVPAELPEEKTESPTQPSDTDKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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