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Report for CCDS52239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52239.1 Public Mus musculus 7 Ap2a1 23 108 98 CCDS HistoryNCBI Gene:11771Re-query CCDS DB by CCDS ID:52239.1Re-query CCDS DB by GeneID:11771See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166972.8 ENSMUSP00000127842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166972.8Link to Ensembl Protein Viewer:ENSMUSP00000127842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166972Re-query CCDS DB by Protein ID:ENSMUSP00000127842
Original member Current member NCBI NM_007458.2 NP_031484.1 Accepted alive Link to Nucleotide Sequence:NM_007458.2Link to Protein Sequence:NP_031484.1Re-query CCDS DB by Nucleotide ID:NM_007458Re-query CCDS DB by Protein ID:NP_031484Link to BLAST:NP_031484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031484.1 977 P17426-1 977 100% 0 0

Chromosomal Locations for CCDS 52239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44900738 44900815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44900987 44901121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44901237 44901306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44901384 44901500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44901591 44901714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44902749 44902838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44902974 44903056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44903144 44903200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44903462 44903527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44903741 44903901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44903989 44904156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44904237 44904468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44904653 44904750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44905685 44905867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44906071 44906208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44906311 44906479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44906834 44906984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44907724 44907832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44909220 44909321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44909699 44909828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44915841 44916034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44916163 44916305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44916402 44916470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44929280 44929346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2934 nt):
ATGCCGGCTGTATCCAAAGGCGATGGCATGCGTGGGCTCGCCGTGTTCATCTCCGACATCCGGAACTGCA
AG
AGCAAAGAGGCTGAGATCAAGAGGATCAACAAGGAACTGGCCAACATCCGTTCCAAGTTCAAAGGGGA
C
AAGGCCTTGGATGGCTACAGTAAAAAGAAGTATGTGTGTAAGCTGCTCTTCATATTCCTGCTTGGCCAT
GAC
ATTGACTTTGGACATATGGAGGCCGTGAACCTGCTAAGCTCTAACAAGTACACGGAGAAGCAGATAG
GG
TACCTGTTCATCTCAGTCCTGGTGAACTCGAACTCAGAACTGATCCGGCTCATCAACAACGCTATCAA
G
AATGACCTGGCCAGTCGCAACCCCACCTTCATGTGCCTGGCCTTGCACTGTATCGCTAACGTGGGCAGC
CGT
GAGATGGGCGAGGCTTTTGCTGCAGACATTCCCCGAATCCTGGTGGCTGGGGACAGCATGGACAGTG
TG
AAGCAGAGTGCCGCCCTATGCCTACTGCGACTCTACAAGGCCTCGCCCGACTTGGTGCCCATGGGCGA
G
TGGACGGCACGTGTAGTGCACTTGCTCAATGATCAGCACATGGGAGTGGTCACAGCTGCTGTCAGCCTC
ATC
ACCTGTCTCTGCAAGAAGAATCCGGATGACTTCAAGACCTGTATCTCCCTGGCTGTGTCTCGCTTAA
GC
CGGATCGTCTCCTCAGCCTCCACTGACCTCCAGGACTACACTTACTACTTCGTTCCTGCACCCTGGCT
C
TCTGTGAAGCTACTGCGGCTGCTCCAGTGTTACCCACCACCAGAGGATGCAGCCGTGAAAGGGCGGTTA
GTG
GAGTGTCTGGAGACTGTGCTCAACAAGGCCCAGGAGCCTCCCAAGTCCAAGAAGGTGCAGCACTCCA
AC
GCCAAGAACGCTATCCTCTTTGAGACCATTAGCCTCATCATCCACTATGACAGTGAGCCCAACCTCCT
G
GTCCGCGCCTGCAACCAGCTGGGCCAGTTCCTGCAGCACCGGGAGACTAACCTGCGCTACCTGGCCCTG
GAG
AGCATGTGCACGCTGGCCAGCTCCGAGTTCTCCCACGAGGCCGTCAAGACCCACATTGATACAGTTA
TT
AATGCCCTCAAGACGGAGCGGGACGTCAGTGTGAGGCAGCGGGCGGCTGATCTCCTGTATGCCATGTG
T
GACCGGAGCAATGCCAAGCAGATTGTGTCAGAGATGCTGCGGTACCTGGAGACTGCTGACTATGCCATC
CGA
GAGGAGATCGTGCTGAAGGTGGCCATCCTGGCTGAGAAGTATGCAGTGGACTACAGCTGGTACGTGG
AC
ACCATCCTCAACCTCATCCGCATCGCGGGCGACTATGTGAGCGAGGAGGTGTGGTACCGCGTGCTGCA
G
ATCGTCACCAACCGTGATGACGTCCAGGGTTATGCTGCCAAGACAGTGTTTGAGGCCCTCCAGGCCCCA
GCC
TGTCATGAGAACATGGTGAAGGTCGGTGGCTACATCCTTGGGGAGTTTGGGAACTTGATTGCTGGGG
AC
CCACGCTCCAGCCCACCAGTGCAGTTCTCGCTGCTGCACTCCAAGTTCCACCTGTGCAGCGTGGCCAC
C
CGCGCTCTGTTGCTGTCCACCTACATCAAGTTCATCAACCTCTTCCCTGAGACCAAGGCCACCATCCAA
GGG
GTTCTGCGTGCCGGCTCCCAGCTGCGAAATGCCGACGTGGAGCTACAGCAGCGGGCCGTGGAGTACC
TC
ACCCTCAGCTCCGTAGCCAGCACCGATGTTCTGGCTACGGTGCTAGAAGAAATGCCCCCATTTCCCGA
G
CGGGAGTCGTCCATCTTGGCCAAGCTGAAGCGCAAGAAGGGCCCTGGGGCAGCCAGTGCCCTAGATGAC
AGC
CGCAGGGACACCAGCAGCAATGACATCAATGGGGGTGTGGAGCCCACCCCCAGCACTGTGTCGACCC
CC
TCACCCTCCGCGGACCTCTTAGGGCTGCGGGCAGCCCCTCCCCCTGCTGCACCCCCGGCTCCCGTAGG
C
GGGAACCTCCTGGTGGATGTCTTCTCTGACGGCCCCACTGCACAGCCCAGCCTGGGGCCCACTCCTGAG
GAG
GCCTTCCTCAGCGAGCTGGAGCCCCCTGCCCCTGAGAGCCCCATGGCTTTGTTGGCTGACCCAGCTC
CA
GCTGCTGACCCAGGTCCTGAGGACATAGGCCCTCCCATTCCAGAAGCAGATGAACTGTTGAATAAGTT
C
GTGTGTAAGAATAGTGGGGTCTTGTTTGAGAACCAGCTGCTGCAGATTGGAGTCAAGTCTGAGTTCCGG
CAG
AACCTGGGCCGCATGTATCTCTTCTATGGCAACAAGACTTCTGTGCAGTTCCAGAACTTCTTGCCCA
CC
GTGGTCCATCCTGGGGACCTCCAGACTCAGCTGGCGGTGCAGACCAAGCGTGTGGCGGCACAAGTGGA
C
GGTGGCGCACAGGTGCAGCAAGTACTCAACATTGAGTGTCTGCGAGACTTCCTGACGCCGCCACTGTTG
TCG
GTGCGCTTCCGGTACGGTGGCACCGCCCAGTCCCTCACTCTGAAGCTCCCAGTGACCATCAACAAAT
TC
TTCCAGCCCACAGAGATGGCGGCCCAAGACTTTTTCCAGCGCTGGAAGCAGCTGAGCCTCCCCCTGCA
G
GAGGCACAGAAAATCTTCAAAGCCAACCACCCGATGGATGCTGAAGTTACTAAGGCCAAGCTTCTGGGG
TTT
GGCTCTGCTCTTCTGGACAATGTGGATCCCAACCCTGAGAACTTTGTGGGTGCTGGAATCATCCAGA
CG
AAGGCCCTGCAGGTGGGGTGTCTGCTTCGGCTGGAGCCCAATGCCCAGGCCCAAATGTACCGTCTAAC
C
CTGCGCACCAGCAAAGAGCCTGTCTCCCGTCACTTGTGTGAGCTGCTGGCCCAGCAGTTCTGA


Translation (977 aa):
MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH
D
IDFGHMEAVNLLSSNKYTEKQI
GYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANVGS
R
EMGEAFAADIPRILVA
GDSMDSVKQSAALCLLRLYKASPDLVPMGEWTARVVHLLNDQHMGVVTAAVSL
I
TCLCKKNPDDFKTCISLAVSRLSR
IVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRL
V
ECLETVLNKAQEPPKSKKVQHSNAKNAILFETISLIIHYD
SEPNLLVRACNQLGQFLQHRETNLRYLAL
E
SMCTLASSEFSHEAVKTHIDTVINALK
TERDVSVRQRAADLLYAMCDRSNAKQIVSEMLRYLETADYAI
R
EEI
VLKVAILAEKYAVDYSWYVDTILNLIRIAGDYVSEEVWYRVLQIVTNRDDVQGYAAKTVFEALQAP
A
CHENMVKVGGYILGEFGNLIAGDPRS
SPPVQFSLLHSKFHLCSVATRALLLSTYIKFINLFPETKATIQ
G
VLRAGSQLRNADVELQQRAVEYLTLSSVASTDVL
ATVLEEMPPFPERESSILAKLKRKKGPGAASALDD
S
RRDTSSNDINGGVEPTPSTV
STPSPSADLLGLRAAPPPAAPPAPVGGNLLVDVFSDGPTAQPSLGPTPE
E
AFL
SELEPPAPESPMALLADPAPAADPGPEDIGPPIPEADELLNKFVCKNSGVLFENQLLQIGVKSEFR
Q
NL
GRMYLFYGNKTSVQFQNFLPTVVHPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLRDFLTPPLL
S
VRF
RYGGTAQSLTLKLPVTINKFFQPTEMAAQDFFQRWKQLSLPLQEAQKIFKANHPMDAEVTKAKLLG
F
GSALLDNVDPNPENFVGAGIIQTKALQVGCLLRLEPNAQAQ
MYRLTLRTSKEPVSRHLCELLAQQF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser