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Report for CCDS18052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18052.1 Public Mus musculus 4 Spink4 23 108 98 CCDS HistoryNCBI Gene:20731Re-query CCDS DB by CCDS ID:18052.1Re-query CCDS DB by GeneID:20731See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030122.4 ENSMUSP00000030122.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030122.4Link to Ensembl Protein Viewer:ENSMUSP00000030122.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030122Re-query CCDS DB by Protein ID:ENSMUSP00000030122
Original member Current member NCBI NM_011463.2 NP_035593.2 Accepted alive Link to Nucleotide Sequence:NM_011463.2Link to Protein Sequence:NP_035593.2Re-query CCDS DB by Nucleotide ID:NM_011463Re-query CCDS DB by Protein ID:NP_035593Link to BLAST:NP_035593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035593.2 86 O35679 86 100% 0 0

Chromosomal Locations for CCDS 18052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40920095 40920155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40924924 40924964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40929079 40929191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40931257 40931302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGCTATGCATCTGTGGCTGGTCACCCTGACCTTGGTTCCCCTCCTTGGCATGGACAGGGAACTGATGG
TGTCAGCTGGGAGCCTTGTTTTCCCCAGAATGCCCTTCTGTGAGCACATGGCTGAGCTTCCAAACTGTCC
CCAGACACCCAACCTGATCTGTGGCACGGATGGGCTCACATATGAAAATGAATGCCACCTTTGCCTGACC
CGGATGAAAACCATGAAGGACATTCAAATCATGAAGGATGGCCAATGCTGA

Translation (86 aa):
MAMHLWLVTLTLVPLLGMDRELMVSAGSLVFPRMPFCEHMAELPNCPQTPNLICGTDGLTYENECHLCLT
RMKTMKDIQIMKDGQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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