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Report for CCDS39785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39785.1 Public Mus musculus 7 Slc1a5 23 108 98 CCDS HistoryNCBI Gene:20514Re-query CCDS DB by CCDS ID:39785.1Re-query CCDS DB by GeneID:20514See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108496.8 ENSMUSP00000104136.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108496.8Link to Ensembl Protein Viewer:ENSMUSP00000104136.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108496Re-query CCDS DB by Protein ID:ENSMUSP00000104136
Original member Current member NCBI NM_009201.2 NP_033227.2 Accepted alive Link to Nucleotide Sequence:NM_009201.2Link to Protein Sequence:NP_033227.2Re-query CCDS DB by Nucleotide ID:NM_009201Re-query CCDS DB by Protein ID:NP_033227Link to BLAST:NP_033227.2

Chromosomal Locations for CCDS 39785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16781901 16782475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16785676 16785718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16786349 16786393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16786871 16786912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16789777 16789937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16793647 16793880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16795758 16795952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16796024 16796158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16797502 16797739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCAGTGGATCCCCCTAAGGCTGACCCCAAAGGGGTAGTAGCGGTGGATTCCACCGCGAACGGTGGCC
CCGCGCTGGGATCCAGAGAGGACCAGAGTGCGAAAGCAGGTGGTTGCTGCGGTTCCCGTGACCGGGTGCG
CCGCTGCATTCGCGCCAACCTGCTGGTGCTGCTCACGGTGGCTGCGGTGGTGGCTGGCGTGGGGCTGGGG
CTGGGGGTCTCGGCGGCGGGCGGTGCTGACGCGCTGGGTCCCGCGCGCTTGACCGCTTTCGCCTTCCCGG
GAGAGCTGCTGCTGCGTCTGCTGAAGATGATCATCCTGCCGCTCGTGGTGTGCAGCCTGATCGGAGGTGC
AGCCAGCTTGGACCCTAGCGCGCTCGGTCGTGTGGGCGCCTGGGCGCTGCTCTTTTTCCTGGTCACCACA
CTGCTCGCGTCGGCGCTCGGCGTGGGTTTGGCCCTGGCGCTGAAGCCGGGCGCCGCCGTTACCGCCATCA
CCTCCATCAACGACTCTGTTGTAGACCCCTGTGCCCGCAGTGCACCAACCAAAGAGGTGCTGGATTCCTT
TCTAGATCTCGTGAGGAATATTTTCCCCTCCAATCTGGTGTCTGCTGCCTTCCGCTCTTTTGCTACCTCA
TATGAACCCAAAGACAACTCATGTAAAATACCGCAATCCTGTATCCAGCGGGAGATCAATTCAACCATGG
TCCAGCTTCTCTGTGAGGTGGAGGGAATGAACATCCTGGGCCTGGTGGTCTTCGCTATCGTCTTTGGTGT
GGCTCTGCGGAAGCTGGGGCCCGAGGGTGAGCTGCTCATTCGTTTCTTCAACTCCTTCAATGATGCCACC
ATGGTCCTGGTCTCCTGGATTATGTGGTACGCACCCGTTGGAATCCTGTTCCTGGTGGCCAGCAAGATTG
TGGAGATGAAAGACGTCCGCCAGCTCTTCATCAGCCTCGGCAAATACATTCTGTGCTGCCTGCTGGGCCA
CGCCATCCACGGGCTCCTGGTTCTGCCTCTCATCTACTTCCTCTTCACCCGCAAAAATCCCTATCGATTC
CTGTGGGGCATCATGACACCCCTGGCCACTGCTTTCGGGACCTCTTCTAGCTCTGCCACCTTGCCTCTGA
TGATGAAGTGTGTAGAGGAGAAGAATGGTGTGGCCAAACACATCAGCCGGTTCATCCTACCCATCGGCGC
CACGGTCAACATGGACGGGGCGGCGCTGTTCCAGTGTGTGGCGGCAGTGTTCATCGCACAACTAAACGGG
GTGTCCCTGGACTTCGTGAAGATCATCACCATCCTGGTCACAGCCACAGCATCCAGTGTCGGTGCGGCAG
GGATCCCTGCAGGGGGCGTCCTCACCCTCGCCATCATCCTGGAAGCAGTCAGCCTGCCTGTGAAGGACAT
CTCCTTGATCTTGGCCGTGGACTGGCTAGTGGACAGGTCCTGTACTGTCCTCAACGTGGAAGGTGATGCT
TTTGGGGCTGGACTGCTTCAGAGTTACGTGGATCGAACCAAGATGCCGAGCTCAGAGCCCGAATTGATCC
AGGTGAAGAACGAGGTGTCTCTGAATCCACTGCCCCTCGCCACAGAGGAGGGGAATCCCCTCCTGAAACA
GTACCAGGGACCCACCGGGGACTCCAGTGCCACGTTCGAAAAGGAATCTGTCATGTGA

Translation (555 aa):
MAVDPPKADPKGVVAVDSTANGGPALGSREDQSAKAGGCCGSRDRVRRCIRANLLVLLTVAAVVAGVGLG
LGVSAAGGADALGPARLTAFAFPGELLLRLLKMIILPLVVCSLIGGAASLDPSALGRVGAWALLFFLVTT
LLASALGVGLALALKPGAAVTAITSINDSVVDPCARSAPTKEVLDSFLDLVRNIFPSNLVSAAFRSFATS
YEPKDNSCKIPQSCIQREINSTMVQLLCEVEGMNILGLVVFAIVFGVALRKLGPEGELLIRFFNSFNDAT
MVLVSWIMWYAPVGILFLVASKIVEMKDVRQLFISLGKYILCCLLGHAIHGLLVLPLIYFLFTRKNPYRF
LWGIMTPLATAFGTSSSSATLPLMMKCVEEKNGVAKHISRFILPIGATVNMDGAALFQCVAAVFIAQLNG
VSLDFVKIITILVTATASSVGAAGIPAGGVLTLAIILEAVSLPVKDISLILAVDWLVDRSCTVLNVEGDA
FGAGLLQSYVDRTKMPSSEPELIQVKNEVSLNPLPLATEEGNPLLKQYQGPTGDSSATFEKESVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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