NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38194.1 Public Mus musculus 2 Bdnf 23 108 98 CCDS HistoryNCBI Gene:12064Re-query CCDS DB by CCDS ID:38194.1Re-query CCDS DB by GeneID:12064See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 38194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111043.8 ENSMUSP00000106672.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111043.8Link to Ensembl Protein Viewer:ENSMUSP00000106672.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111043Re-query CCDS DB by Protein ID:ENSMUSP00000106672
Original member Current member EBI ENSMUST00000111044.2 ENSMUSP00000106673.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111044.2Link to Ensembl Protein Viewer:ENSMUSP00000106673.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111044Re-query CCDS DB by Protein ID:ENSMUSP00000106673
Original member Current member EBI ENSMUST00000111045.8 ENSMUSP00000106674.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111045.8Link to Ensembl Protein Viewer:ENSMUSP00000106674.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111045Re-query CCDS DB by Protein ID:ENSMUSP00000106674
Original member Current member EBI ENSMUST00000111046.8 ENSMUSP00000106675.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111046.8Link to Ensembl Protein Viewer:ENSMUSP00000106675.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111046Re-query CCDS DB by Protein ID:ENSMUSP00000106675
Original member Current member EBI ENSMUST00000111047.8 ENSMUSP00000106676.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111047.8Link to Ensembl Protein Viewer:ENSMUSP00000106676.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111047Re-query CCDS DB by Protein ID:ENSMUSP00000106676
Original member Current member EBI ENSMUST00000111049.8 ENSMUSP00000106678.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111049.8Link to Ensembl Protein Viewer:ENSMUSP00000106678.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111049Re-query CCDS DB by Protein ID:ENSMUSP00000106678
Original member Current member EBI ENSMUST00000111050.9 ENSMUSP00000106679.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111050.9Link to Ensembl Protein Viewer:ENSMUSP00000106679.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111050Re-query CCDS DB by Protein ID:ENSMUSP00000106679
Original member Current member EBI ENSMUST00000111051.9 ENSMUSP00000106680.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111051.9Link to Ensembl Protein Viewer:ENSMUSP00000106680.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111051Re-query CCDS DB by Protein ID:ENSMUSP00000106680
Original member Current member EBI ENSMUST00000176893.7 ENSMUSP00000135762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176893.7Link to Ensembl Protein Viewer:ENSMUSP00000135762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176893Re-query CCDS DB by Protein ID:ENSMUSP00000135762
Original member Current member NCBI NM_001048139.1 NP_001041604.1 Accepted alive Link to Nucleotide Sequence:NM_001048139.1Link to Protein Sequence:NP_001041604.1Re-query CCDS DB by Nucleotide ID:NM_001048139Re-query CCDS DB by Protein ID:NP_001041604Link to BLAST:NP_001041604.1
Original member Current member NCBI NM_001048141.1 NP_001041606.1 Accepted alive Link to Nucleotide Sequence:NM_001048141.1Link to Protein Sequence:NP_001041606.1Re-query CCDS DB by Nucleotide ID:NM_001048141Re-query CCDS DB by Protein ID:NP_001041606Link to BLAST:NP_001041606.1
Original member Current member NCBI NM_001048142.1 NP_001041607.1 Accepted alive Link to Nucleotide Sequence:NM_001048142.1Link to Protein Sequence:NP_001041607.1Re-query CCDS DB by Nucleotide ID:NM_001048142Re-query CCDS DB by Protein ID:NP_001041607Link to BLAST:NP_001041607.1
Original member Current member NCBI NM_001285416.1 NP_001272345.1 Accepted alive Link to Nucleotide Sequence:NM_001285416.1Link to Protein Sequence:NP_001272345.1Re-query CCDS DB by Nucleotide ID:NM_001285416Re-query CCDS DB by Protein ID:NP_001272345Link to BLAST:NP_001272345.1
Original member Current member NCBI NM_001285417.1 NP_001272346.1 Accepted alive Link to Nucleotide Sequence:NM_001285417.1Link to Protein Sequence:NP_001272346.1Re-query CCDS DB by Nucleotide ID:NM_001285417Re-query CCDS DB by Protein ID:NP_001272346Link to BLAST:NP_001272346.1
Original member Current member NCBI NM_001285418.1 NP_001272347.1 Accepted alive Link to Nucleotide Sequence:NM_001285418.1Link to Protein Sequence:NP_001272347.1Re-query CCDS DB by Nucleotide ID:NM_001285418Re-query CCDS DB by Protein ID:NP_001272347Link to BLAST:NP_001272347.1
Original member Current member NCBI NM_001285419.1 NP_001272348.1 Accepted alive Link to Nucleotide Sequence:NM_001285419.1Link to Protein Sequence:NP_001272348.1Re-query CCDS DB by Nucleotide ID:NM_001285419Re-query CCDS DB by Protein ID:NP_001272348Link to BLAST:NP_001272348.1
Original member Current member NCBI NM_001285420.1 NP_001272349.1 Accepted alive Link to Nucleotide Sequence:NM_001285420.1Link to Protein Sequence:NP_001272349.1Re-query CCDS DB by Nucleotide ID:NM_001285420Re-query CCDS DB by Protein ID:NP_001272349Link to BLAST:NP_001272349.1
Original member Current member NCBI NM_001285421.1 NP_001272350.1 Accepted alive Link to Nucleotide Sequence:NM_001285421.1Link to Protein Sequence:NP_001272350.1Re-query CCDS DB by Nucleotide ID:NM_001285421Re-query CCDS DB by Protein ID:NP_001272350Link to BLAST:NP_001272350.1
Original member Current member NCBI NM_001285422.1 NP_001272351.1 Accepted alive Link to Nucleotide Sequence:NM_001285422.1Link to Protein Sequence:NP_001272351.1Re-query CCDS DB by Nucleotide ID:NM_001285422Re-query CCDS DB by Protein ID:NP_001272351Link to BLAST:NP_001272351.1
Original member Current member NCBI NM_001316310.1 NP_001303239.1 Accepted alive Link to Nucleotide Sequence:NM_001316310.1Link to Protein Sequence:NP_001303239.1Re-query CCDS DB by Nucleotide ID:NM_001316310Re-query CCDS DB by Protein ID:NP_001303239Link to BLAST:NP_001303239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041604.1 249 P21237-1 249 100% 0 0
NP_001041606.1 249 P21237-1 249 100% 0 0
NP_001041607.1 249 P21237-1 249 100% 0 0
NP_001272345.1 249 P21237-1 249 100% 0 0
NP_001272346.1 249 P21237-1 249 100% 0 0
NP_001272347.1 249 P21237-1 249 100% 0 0
NP_001272348.1 249 P21237-1 249 100% 0 0
NP_001272349.1 249 P21237-1 249 100% 0 0
NP_001272350.1 249 P21237-1 249 100% 0 0
NP_001272351.1 249 P21237-1 249 100% 0 0
NP_001303239.1 249 P21237-1 249 100% 0 0

Chromosomal Locations for CCDS 38194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 109723403 109724152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCGGTTGCATGAAGGCGGCGCCCATGAAAGAAG
TAAACGTCCACGGACAAGGCAACTTGGCCTACCCAGGTGTGCGGACCCATGGGACTCTGGAGAGCGTGAA
TGGGCCCAGGGCAGGTTCGAGAGGTCTGACGACGACATCACTGGCTGACACTTTTGAGCACGTCATCGAA
GAGCTGCTGGATGAGGACCAGAAGGTTCGGCCCAACGAAGAAAACCATAAGGACGCGGACTTGTACACTT
CCCGGGTGATGCTCAGCAGTCAAGTGCCTTTGGAGCCTCCTCTACTCTTTCTGCTGGAGGAATACAAAAA
TTACCTGGATGCCGCAAACATGTCTATGAGGGTTCGGCGCCACTCCGACCCTGCCCGCCGTGGGGAGCTG
AGCGTGTGTGACAGTATTAGCGAGTGGGTCACAGCGGCAGATAAAAAGACTGCAGTGGACATGTCTGGCG
GGACGGTCACAGTCCTAGAGAAAGTCCCGGTATCCAAAGGCCAACTGAAGCAGTATTTCTACGAGACCAA
GTGTAATCCCATGGGTTACACCAAGGAAGGCTGCAGGGGCATAGACAAAAGGCACTGGAACTCGCAATGC
CGAACTACCCAATCGTATGTTCGGGCCCTTACTATGGATAGCAAAAAGAGAATTGGCTGGCGATTCATAA
GGATAGACACTTCCTGTGTATGTACACTGACCATTAAAAGGGGAAGATAG

Translation (249 aa):
MTILFLTMVISYFGCMKAAPMKEVNVHGQGNLAYPGVRTHGTLESVNGPRAGSRGLTTTSLADTFEHVIE
ELLDEDQKVRPNEENHKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGEL
SVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQC
RTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH