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Report for CCDS27868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27868.1 Public Mus musculus 15 Krt8 23 108 98 CCDS HistoryNCBI Gene:16691Re-query CCDS DB by CCDS ID:27868.1Re-query CCDS DB by GeneID:16691See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023952.9 ENSMUSP00000023952.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023952.9Link to Ensembl Protein Viewer:ENSMUSP00000023952.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023952Re-query CCDS DB by Protein ID:ENSMUSP00000023952
Original member Current member NCBI NM_031170.2 NP_112447.2 Accepted alive Link to Nucleotide Sequence:NM_031170.2Link to Protein Sequence:NP_112447.2Re-query CCDS DB by Nucleotide ID:NM_031170Re-query CCDS DB by Protein ID:NP_112447Link to BLAST:NP_112447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112447.2 490 P11679 490 100% 0 0

Chromosomal Locations for CCDS 27868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101996940 101997133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101997660 101997718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101997853 101998073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101998391 101998516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101998774 101998938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101999431 101999526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102000580 102000640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102001417 102001625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102003898 102004239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGTCCATCAGGGTGACTCAGAAATCCTACAAGATGTCCACCTCCGGTCCCCGGGCCTTCAGCAGCCGCT
CGTTCACGAGTGGACCCGGTGCCCGCATCAGCTCTTCCAGCTTTTCCCGGGTGGGCAGCAGCAGCAGCAG
CTTCCGGGGAAGCATGGGCACCGGCGTGGGTCTGGGCGGCTTTGGCGGGGCTGGTGTCGGGGGCATCACA
GCCGTCACGGTGAACCAGAGCCTGTTGAGCCCCTTGAAGCTGGAGGTGGACCCCAACATCCAGGCTGTGC
GCACTCAGGAGAAGGAGCAGATTAAATCCCTGAACAACAAGTTCGCCTCCTTCATTGACAAGGTGCGCTT
CCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGAGCCTGTTGCAGCAGCAGAAGACGTCGAGGAGC
AACATGGACAACATGTTTGAGAGCTACATCAACAACCTCCGCCGGCAGCTGGAAGCCCTGGGCCAGGAGA
AGCTGAAGCTGGAGGCTGAGCTTGGCAACATGCAGGGCCTGGTGGAGGACTTCAAGAATAAGTATGAGGA
TGAGATCAACAAGCGTACAGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGACGAAGCATAC
ATGAACAAGGTGGAACTAGAGTCCCGCCTGGAAGGACTGACCGACGAGATCAACTTCCTCCGGCAGATCC
ATGAAGAGGAGATCCGTGAGTTGCAGTCTCAGATCTCAGACACGTCTGTGGTGCTGTCTATGGACAACAG
CCGCTCCCTGGACATGGATGGCATCATCGCTGAAGTTCGTGCCCAGTACGAGGACATTGCCAATCGCAGC
CGAGCTGAGGCTGAAACCATGTACCAGATTAAGTATGAGGAATTGCAGACCCTGGCTGGGAAGCACGGGG
ATGATCTGCGCCGCACAAAGACAGAGATCTCCGAGATGAACCGCAACATCAACCGCCTGCAGGCGGAGAT
TGAAGCCCTCAAAGGCCAGAGGGCATCGTTGGAGGCAGCCATCGCTGATGCTGAGCAGCGTGGGGAGATG
GCCATTAAGGATGCCCAGACCAAGCTGGCTGAGCTGGAGGCTGCCCTGCAACGGGCCAAGCAGGACATGG
CCAGGCAGCTGCGCGAGTACCAGGAGCTTATGAACGTCAAGCTGGCCCTGGACATCGAGATCACCACCTA
CCGCAAGCTGCTGGAGGGGGAGGAGAGCAGGCTGGAGTCTGGGATGCAGAACATGAGCATTCATACGAAG
ACCACCAGCGGCTACTCAGGAGGACTGAGTTCATCCTATGGGGGACTCACTAGCCCTGGCTTCAGCTACG
GAATGAGCTCCTTCCAGCCCGGCTTCGGTTCTGCCGGGGGATCCAACACTTTCAGCCGCACCACCAAGGC
TGTGGTTGTGAAGAAGATTGAAACCCGAGATGGGAAGCTGGTGTCCGAGTCTTCTGATGTCGTGTCCAAG
TGA

Translation (490 aa):
MSIRVTQKSYKMSTSGPRAFSSRSFTSGPGARISSSSFSRVGSSSSSFRGSMGTGVGLGGFGGAGVGGIT
AVTVNQSLLSPLKLEVDPNIQAVRTQEKEQIKSLNNKFASFIDKVRFLEQQNKMLETKWSLLQQQKTSRS
NMDNMFESYINNLRRQLEALGQEKLKLEAELGNMQGLVEDFKNKYEDEINKRTEMENEFVLIKKDVDEAY
MNKVELESRLEGLTDEINFLRQIHEEEIRELQSQISDTSVVLSMDNSRSLDMDGIIAEVRAQYEDIANRS
RAEAETMYQIKYEELQTLAGKHGDDLRRTKTEISEMNRNINRLQAEIEALKGQRASLEAAIADAEQRGEM
AIKDAQTKLAELEAALQRAKQDMARQLREYQELMNVKLALDIEITTYRKLLEGEESRLESGMQNMSIHTK
TTSGYSGGLSSSYGGLTSPGFSYGMSSFQPGFGSAGGSNTFSRTTKAVVVKKIETRDGKLVSESSDVVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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